Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30558X
         (287 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g56530.1 68414.m06501 hydroxyproline-rich glycoprotein family...    27   1.6  
At1g48650.1 68414.m05445 helicase domain-containing protein cont...    27   1.6  
At4g31390.1 68417.m04452 ABC1 family protein contains Pfam domai...    27   2.1  
At3g52120.1 68416.m05721 SWAP (Suppressor-of-White-APricot)/surp...    25   6.4  
At2g39180.1 68415.m04812 protein kinase family protein contains ...    25   6.4  
At3g18480.1 68416.m02348 CCAAT displacement protein-related / CD...    25   8.4  

>At1g56530.1 68414.m06501 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965;
          Length = 185

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 15/38 (39%), Positives = 17/38 (44%)
 Frame = +1

Query: 70  PRDRGHLHRRR*SYAA*APQDPHHDY*TSNVGAARPRG 183
           P    H H RR + AA A Q PHH   T+  G     G
Sbjct: 107 PSPDNHRHHRRTTTAAVAGQPPHHRRTTAAAGTTTIAG 144


>At1g48650.1 68414.m05445 helicase domain-containing protein
           contains similarity to DEIH-box RNA/DNA helicase
           [Arabidopsis thaliana] GI:5881579; contains Pfam
           profiles PF04408: Helicase associated domain (HA2),
           PF00271: Helicase conserved C-terminal domain, PF00035:
           Double-stranded RNA binding motif
          Length = 1197

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -3

Query: 87  MTAITRANARRPFILPFDDAFLCEAGGSR 1
           MT +   + R PF++PFD   L E   S+
Sbjct: 810 MTVVAGLSVRDPFLMPFDKKDLAETARSK 838


>At4g31390.1 68417.m04452 ABC1 family protein contains Pfam domain,
           PF03109: ABC1 family
          Length = 682

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
 Frame = -2

Query: 223 LRHSVLDVFS--LRDVPAAELLRRWTFSSRGADPAVPTPHTTSVGGANDRD 77
           + H+VL+     LR + A EL R  TFS+        T   T VGG N  D
Sbjct: 23  INHAVLNRRDALLRSLNAVELRRSRTFSAVRTSNFSVTAAATDVGGRNSTD 73


>At3g52120.1 68416.m05721 SWAP (Suppressor-of-White-APricot)/surp
           domain-containing protein / D111/G-patch
           domain-containing protein contains Pfam profiles
           PF01585: G-patch domain, PF01805: Surp module
          Length = 443

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = -1

Query: 71  GPTQEDPSSCLSMMRFYVKQAA 6
           GP   DP   LSMM FY+K+AA
Sbjct: 267 GPRGADP---LSMMEFYMKKAA 285


>At2g39180.1 68415.m04812 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 776

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
 Frame = -3

Query: 276 RSLTLAILPTWYRFSSKLSDI--PCSMCSASEMSPRPSCSD 160
           R L L +L  W    S  +D   P  +CS    SPR +C D
Sbjct: 305 RELDL-VLDCWRVHDSSKADYSPPLELCSPGMCSPRGNCGD 344


>At3g18480.1 68416.m02348 CCAAT displacement protein-related /
           CDP-related similar to CCAAT displacement protein (CDP)
           (Cut-like 1) (Swiss-Prot:P39880) [Homo sapiens];
           contains Pfam:PF00904 Involucrin repeat
          Length = 689

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +2

Query: 185 ISEAEHIEHGMSESL-DEKRYHVGKIARVNDLLNE 286
           ISE     H +  +L +E+  HV +I ++N LLN+
Sbjct: 318 ISELNMEIHNVETALANERESHVAEIKKLNSLLNK 352


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,802,439
Number of Sequences: 28952
Number of extensions: 90636
Number of successful extensions: 296
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 294
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 296
length of database: 12,070,560
effective HSP length: 69
effective length of database: 10,072,872
effective search space used: 261894672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)