Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30557X
         (312 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces ...    35   0.003
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    28   0.37 
SPAC2F7.15 |rsm24||mitochondrial ribosomal protein subunit S24|S...    25   2.0  
SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor E|S...    25   2.0  
SPAC23C11.14 |zhf1|zhf, zhf|zinc ion transporter Zhf1|Schizosacc...    24   6.1  
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac...    24   6.1  
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    23   8.1  

>SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 253

 Score = 34.7 bits (76), Expect = 0.003
 Identities = 13/21 (61%), Positives = 18/21 (85%)
 Frame = +3

Query: 147 KEDQKEWVPVTKLGRLXREEK 209
           ++++KEWVPVTKLGRL +  K
Sbjct: 28  RDEEKEWVPVTKLGRLVKAGK 48


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 27.9 bits (59), Expect = 0.37
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -1

Query: 144 RAHDHGRDHDRVHEDRRGLYLHRVIRIRRENRHVHRLEQRPP 19
           ++HDHG  H + H DR      +  R  R++R     ++ PP
Sbjct: 720 QSHDHGHSHSKSH-DREKEKEKKKDREHRKHRETEEEDEGPP 760


>SPAC2F7.15 |rsm24||mitochondrial ribosomal protein subunit
           S24|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 258

 Score = 25.4 bits (53), Expect = 2.0
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +3

Query: 183 LGRLXREEKSTNSRAFTCFFTIKESRSLISSSP 281
           LG+L +      SRAF+ F+  +  RS   S+P
Sbjct: 17  LGQLSKSSFCATSRAFSVFYFTRFKRSAYVSAP 49


>SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor
           E|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 511

 Score = 25.4 bits (53), Expect = 2.0
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -3

Query: 265 NDLDSLIVKKQVNALEFVDFSSRXRRPSLV 176
           ND   +I+ K VNA +FV    R ++P +V
Sbjct: 25  NDRYQVILDKNVNAKQFVKTCWRNKKPLIV 54


>SPAC23C11.14 |zhf1|zhf, zhf|zinc ion transporter
           Zhf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 387

 Score = 23.8 bits (49), Expect = 6.1
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = -1

Query: 138 HDHGRDHDRVH 106
           HDHG DH   H
Sbjct: 134 HDHGHDHPHTH 144


>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
           Smc6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1140

 Score = 23.8 bits (49), Expect = 6.1
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +2

Query: 152 RPERVGSCHQTRPSXSRRKIDKLESIYLFLYNQ 250
           RP R+G    T     ++ +D L+  Y F  NQ
Sbjct: 703 RPPRIGFSSSTSIEAEKKILDDLKKQYNFASNQ 735


>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1367

 Score = 23.4 bits (48), Expect = 8.1
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +2

Query: 191  SXSRRKIDKLESIYLFLYNQRI*IINFFL 277
            S + R I+ +E I LF+ +  I +IN F+
Sbjct: 1204 SWTGRNIECIEDIGLFISSPTIFVINIFI 1232


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 944,429
Number of Sequences: 5004
Number of extensions: 13571
Number of successful extensions: 46
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 81889040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)