Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30557X
         (312 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0756 + 5819367-5820038,5820847-5821005                           35   0.015
03_06_0386 + 33555682-33556344,33557138-33557299                       33   0.062
03_05_1058 - 30014796-30014961,30015711-30016450,30016756-300168...    27   2.3  
03_01_0510 + 3841630-3844089,3844235-3844358,3844641-3844786,384...    27   3.1  
03_06_0170 - 32128619-32129647                                         26   7.2  
11_06_0347 + 22555087-22555943,22556638-22558783                       25   9.5  
05_01_0029 + 187769-188707,188971-189246,189978-190174,190263-19...    25   9.5  
01_01_0104 + 780442-781273,782514-783424                               25   9.5  

>07_01_0756 + 5819367-5820038,5820847-5821005
          Length = 276

 Score = 34.7 bits (76), Expect = 0.015
 Identities = 12/21 (57%), Positives = 19/21 (90%)
 Frame = +3

Query: 147 KEDQKEWVPVTKLGRLXREEK 209
           ++++++WVPVTKLGRL +E K
Sbjct: 41  RQEEEKWVPVTKLGRLVKENK 61


>03_06_0386 + 33555682-33556344,33557138-33557299
          Length = 274

 Score = 32.7 bits (71), Expect = 0.062
 Identities = 11/19 (57%), Positives = 18/19 (94%)
 Frame = +3

Query: 147 KEDQKEWVPVTKLGRLXRE 203
           ++++++WVPVTKLGRL +E
Sbjct: 38  RQEEEKWVPVTKLGRLVKE 56


>03_05_1058 -
           30014796-30014961,30015711-30016450,30016756-30016887,
           30017509-30018021,30019208-30019582
          Length = 641

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = -3

Query: 301 RTHHSGTGEEEINDLDSLIVKKQVNALEFVDFSSRXRRPSLVTGT 167
           + + S   + E+N      VK  V   EF DF SR  +P +++GT
Sbjct: 510 KEYRSSLLKTEVNKTTPFQVKDSVGKGEF-DFGSRAEKPFILSGT 553


>03_01_0510 +
           3841630-3844089,3844235-3844358,3844641-3844786,
           3844861-3844958,3845313-3845502
          Length = 1005

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = -1

Query: 132 HGRDHDRVHEDRRGLYLHRVIRIRRENRHVHRLEQRPPLLNDGL 1
           +GR H     D RG+ L+ +++  R +  V++ E   P L  GL
Sbjct: 48  YGRIHFPGDTDVRGMDLNGIVKFGRHSVEVYKDEASKPPLGQGL 91


>03_06_0170 - 32128619-32129647
          Length = 342

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 15/59 (25%), Positives = 23/59 (38%)
 Frame = -1

Query: 198 EXDGRVW*QEPTLSGLPCRAHDHGRDHDRVHEDRRGLYLHRVIRIRRENRHVHRLEQRP 22
           E  GR +   P   G  C A ++G + D V+          V ++  +   VH L   P
Sbjct: 246 EIGGRAFFLAPLYFGASCSADEYGLEKDSVYASYAVDKCFEVSKVEDDETEVHDLIDAP 304


>11_06_0347 + 22555087-22555943,22556638-22558783
          Length = 1000

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = -1

Query: 63  RRENRHVHRLEQRPPL 16
           RR+N HVH+L+Q  P+
Sbjct: 330 RRQNGHVHKLKQLDPV 345


>05_01_0029 +
           187769-188707,188971-189246,189978-190174,190263-190404,
           190584-190862,190941-191013,191331-191379,192169-192433,
           192576-192631,192777-192845,193028-193139,193682-193771,
           193955-194125,194449-194506,194970-195128,195379-195401
          Length = 985

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -1

Query: 114 RVHEDRRGLYLHRVIRIRRENRHVHRLEQR 25
           RVH  R+G  +H + R    +  + RLE+R
Sbjct: 841 RVHHHRQGQVVHNLSRATNLDARLTRLEER 870


>01_01_0104 + 780442-781273,782514-783424
          Length = 580

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = -3

Query: 295 HHSGTGEEEINDLDSLIVKKQVNALEFVDFSSRXRRPSLV 176
           H +G GEE IN++ ++     +N    + F S   R  L+
Sbjct: 369 HSTGNGEEFINEVATIGQIHHINIARLLGFCSEGTRHILI 408


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,398,920
Number of Sequences: 37544
Number of extensions: 91444
Number of successful extensions: 346
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 343
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 346
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 388087168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)