Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30557X
         (312 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4413| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   1.0  
SB_55025| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   5.4  
SB_54640| Best HMM Match : TolA (HMM E-Value=1.7)                      26   5.4  
SB_3375| Best HMM Match : No HMM Matches (HMM E-Value=.)               26   7.2  

>SB_4413| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 252

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +3

Query: 165 WVPVTKLGRLXREEK-STNSRAFTCFFTIKE 254
           WVPVTKLGRL ++ K  T    +     IKE
Sbjct: 8   WVPVTKLGRLVKDLKIKTLEHIYLFSLPIKE 38


>SB_55025| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2468

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 11/17 (64%), Positives = 12/17 (70%), Gaps = 1/17 (5%)
 Frame = -1

Query: 144  RAHDHGRDH-DRVHEDR 97
            R H H RDH DR H+DR
Sbjct: 1716 RGHRHDRDHDDRDHDDR 1732


>SB_54640| Best HMM Match : TolA (HMM E-Value=1.7)
          Length = 589

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 14/25 (56%), Positives = 17/25 (68%)
 Frame = +1

Query: 196 FAKKNRQTREHLLVSLQSKNLDH*F 270
           FAK+NR  +E   V LQ+K LDH F
Sbjct: 220 FAKRNRAQKEVFKVCLQNK-LDHKF 243


>SB_3375| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 103

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 20/54 (37%), Positives = 26/54 (48%)
 Frame = -1

Query: 165 TLSGLPCRAHDHGRDHDRVHEDRRGLYLHRVIRIRRENRHVHRLEQRPPLLNDG 4
           TLSG      D G  H R+ + +R L L   IR+  ++   HRL Q   LL  G
Sbjct: 34  TLSGYLRVLADDGLTH-RLAQVKRLLTLSGYIRVLADDGLTHRLAQVKRLLTKG 86


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,145,077
Number of Sequences: 59808
Number of extensions: 101103
Number of successful extensions: 278
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 268
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 277
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 387973711
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)