Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30557X
         (312 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY027891-1|AAK15783.1|  801|Anopheles gambiae collagen IV alpha ...    23   3.5  
AY753541-1|AAV28544.1| 3398|Anopheles gambiae SGS4 protein.            22   6.1  
AM422833-1|CAM12801.1| 2139|Anopheles gambiae voltage-gated sodi...    21   8.1  

>AY027891-1|AAK15783.1|  801|Anopheles gambiae collagen IV alpha 1
           chain precursor protein.
          Length = 801

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -1

Query: 171 EPTLSGLPCRAHDHGRDHDRVHEDRRGL 88
           EP  SG   +A D G+  +R H+  +GL
Sbjct: 315 EPGRSGEKGQAGDRGQVGERGHKGEKGL 342


>AY753541-1|AAV28544.1| 3398|Anopheles gambiae SGS4 protein.
          Length = 3398

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 9/35 (25%), Positives = 18/35 (51%)
 Frame = -3

Query: 274  EEINDLDSLIVKKQVNALEFVDFSSRXRRPSLVTG 170
            EE++++   +V K   A++   F     +  +VTG
Sbjct: 1031 EEVDNISQTVVSKAQFAMDLSQFGVLTNQHGVVTG 1065


>AM422833-1|CAM12801.1| 2139|Anopheles gambiae voltage-gated sodium
           channel alpha subunitprotein.
          Length = 2139

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 12/51 (23%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
 Frame = +1

Query: 154 TRKSGFLSPNSAVXFAKKNR----QTREHLLVSLQSKNLDH*FLPRPSLND 294
           +R S + S  S + +          T+E  L +  ++N +H  +P P+ N+
Sbjct: 632 SRHSSYTSHQSRISYTSHGDLLGGMTKESRLRNRSARNTNHSIVPPPNANN 682


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 233,429
Number of Sequences: 2352
Number of extensions: 2765
Number of successful extensions: 12
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 563,979
effective HSP length: 56
effective length of database: 432,267
effective search space used: 20316549
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)