Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30557X
(312 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U42436-10|AAF99899.1| 272|Caenorhabditis elegans Ribosomal prot... 35 0.014
Z81048-2|CAB02840.1| 553|Caenorhabditis elegans Hypothetical pr... 29 0.90
U00055-3|AAA50723.3| 693|Caenorhabditis elegans Hypothetical pr... 27 2.1
AF499444-1|AAM27195.1| 945|Caenorhabditis elegans poly ADP-ribo... 27 2.8
AC024200-15|AAF36011.1| 945|Caenorhabditis elegans Poly(adp-rib... 27 2.8
AF047659-3|AAC04423.2| 1650|Caenorhabditis elegans Vitellogenin ... 27 3.6
AF047659-2|AAQ91901.1| 1651|Caenorhabditis elegans Vitellogenin ... 27 3.6
X56213-1|CAA39670.1| 1651|Caenorhabditis elegans vitellogenin pr... 26 4.8
Z82069-7|CAB04907.2| 1792|Caenorhabditis elegans Hypothetical pr... 25 8.4
Z68105-6|CAA92119.4| 1340|Caenorhabditis elegans Hypothetical pr... 25 8.4
Z68010-4|CAJ76939.1| 1340|Caenorhabditis elegans Hypothetical pr... 25 8.4
U58755-10|AAB00699.1| 2761|Caenorhabditis elegans Hypothetical p... 25 8.4
U58753-9|AAC24441.2| 441|Caenorhabditis elegans Seryl trna synt... 25 8.4
AY436362-1|AAR30497.1| 1293|Caenorhabditis elegans RhoGEF protein. 25 8.4
AL132902-15|CAC14425.1| 1792|Caenorhabditis elegans Hypothetical... 25 8.4
AL132858-6|CAB60475.1| 412|Caenorhabditis elegans Hypothetical ... 25 8.4
AB016796-1|BAA74732.1| 441|Caenorhabditis elegans Seryl-tRNA sy... 25 8.4
>U42436-10|AAF99899.1| 272|Caenorhabditis elegans Ribosomal
protein, small subunitprotein 2 protein.
Length = 272
Score = 34.7 bits (76), Expect = 0.014
Identities = 14/22 (63%), Positives = 17/22 (77%)
Frame = +3
Query: 150 EDQKEWVPVTKLGRLXREEKST 215
E + EW PVTKLGRL +E+K T
Sbjct: 52 EKETEWTPVTKLGRLVKEKKIT 73
>Z81048-2|CAB02840.1| 553|Caenorhabditis elegans Hypothetical
protein C41G7.3 protein.
Length = 553
Score = 28.7 bits (61), Expect = 0.90
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Frame = +3
Query: 150 EDQKEWVPVTKLGRLXREE---KSTNSRAFTCFFTI-KESRSLISSSPV 284
E K+W+P T++G++ K R F C T+ E +S ++PV
Sbjct: 240 EKIKQWIPTTEVGKILGNRAAVKKHIERQFNCVITVHTEVQSSFGATPV 288
>U00055-3|AAA50723.3| 693|Caenorhabditis elegans Hypothetical
protein R02F2.7 protein.
Length = 693
Score = 27.5 bits (58), Expect = 2.1
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +2
Query: 155 PERVGSCHQTRPSXSRRKIDKLESIYLFLYN 247
P + SC TR + +K+ LE++ FL+N
Sbjct: 329 PSIINSCSNTRQITASKKLKNLENLQDFLHN 359
>AF499444-1|AAM27195.1| 945|Caenorhabditis elegans poly ADP-ribose
metabolism enzyme-1 protein.
Length = 945
Score = 27.1 bits (57), Expect = 2.8
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = -3
Query: 274 EEINDLDSLIVKKQVNALEFVDFSSR 197
E +ND+ L+VK ++A +DFS++
Sbjct: 635 EVLNDISDLLVKLPIDASRILDFSNK 660
>AC024200-15|AAF36011.1| 945|Caenorhabditis elegans
Poly(adp-ribose) metabolism enzymeprotein 1 protein.
Length = 945
Score = 27.1 bits (57), Expect = 2.8
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = -3
Query: 274 EEINDLDSLIVKKQVNALEFVDFSSR 197
E +ND+ L+VK ++A +DFS++
Sbjct: 635 EVLNDISDLLVKLPIDASRILDFSNK 660
>AF047659-3|AAC04423.2| 1650|Caenorhabditis elegans Vitellogenin
structural genes (yolk protein genes) protein 6, isoform
a protein.
Length = 1650
Score = 26.6 bits (56), Expect = 3.6
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +3
Query: 156 QKEWVPVTKLGRLXREEKSTNSRAFT 233
Q EW ++++G R+E++ RAFT
Sbjct: 616 QPEWSVLSQIGNQLRQERNQQVRAFT 641
>AF047659-2|AAQ91901.1| 1651|Caenorhabditis elegans Vitellogenin
structural genes (yolk protein genes) protein 6, isoform
c protein.
Length = 1651
Score = 26.6 bits (56), Expect = 3.6
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +3
Query: 156 QKEWVPVTKLGRLXREEKSTNSRAFT 233
Q EW ++++G R+E++ RAFT
Sbjct: 616 QPEWSVLSQIGNQLRQERNQQVRAFT 641
>X56213-1|CAA39670.1| 1651|Caenorhabditis elegans vitellogenin
protein.
Length = 1651
Score = 26.2 bits (55), Expect = 4.8
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +3
Query: 156 QKEWVPVTKLGRLXREEKSTNSRAFT 233
Q EW ++++G R+E+ RAFT
Sbjct: 616 QPEWSVLSQIGNQLRQERDQQVRAFT 641
>Z82069-7|CAB04907.2| 1792|Caenorhabditis elegans Hypothetical
protein W04A8.7 protein.
Length = 1792
Score = 25.4 bits (53), Expect = 8.4
Identities = 11/27 (40%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Frame = -1
Query: 171 EPTLSGLP-CRAHDHGRDHDRVHEDRR 94
+P + G+P R HD G DH H R
Sbjct: 422 DPLIYGMPEDRRHDEGPDHHHHHHHHR 448
>Z68105-6|CAA92119.4| 1340|Caenorhabditis elegans Hypothetical protein
F13E6.6 protein.
Length = 1340
Score = 25.4 bits (53), Expect = 8.4
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = +3
Query: 156 QKEWVPVTKLGRLXREEKSTNSRAFTCFF 242
+ W P+ L L +EK+ + RAF F
Sbjct: 1032 ETRWSPILPLAPLIAKEKANDKRAFFLIF 1060
>Z68010-4|CAJ76939.1| 1340|Caenorhabditis elegans Hypothetical protein
F13E6.6 protein.
Length = 1340
Score = 25.4 bits (53), Expect = 8.4
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = +3
Query: 156 QKEWVPVTKLGRLXREEKSTNSRAFTCFF 242
+ W P+ L L +EK+ + RAF F
Sbjct: 1032 ETRWSPILPLAPLIAKEKANDKRAFFLIF 1060
>U58755-10|AAB00699.1| 2761|Caenorhabditis elegans Hypothetical
protein C34D4.14 protein.
Length = 2761
Score = 25.4 bits (53), Expect = 8.4
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -1
Query: 126 RDHDRVHEDRRGLYLHRVIRIRR 58
R HDR HE R G H +++ R
Sbjct: 2316 RQHDRYHEYRVGRLRHERVKVTR 2338
>U58753-9|AAC24441.2| 441|Caenorhabditis elegans Seryl trna
synthetase protein 1 protein.
Length = 441
Score = 25.4 bits (53), Expect = 8.4
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +1
Query: 1 EPIVQQWRTLLQPVDVA 51
E +VQ WR+LL P D +
Sbjct: 150 EKLVQTWRSLLHPTDAS 166
>AY436362-1|AAR30497.1| 1293|Caenorhabditis elegans RhoGEF protein.
Length = 1293
Score = 25.4 bits (53), Expect = 8.4
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = +3
Query: 156 QKEWVPVTKLGRLXREEKSTNSRAFTCFF 242
+ W P+ L L +EK+ + RAF F
Sbjct: 985 ETRWSPILPLAPLIAKEKANDKRAFFLIF 1013
>AL132902-15|CAC14425.1| 1792|Caenorhabditis elegans Hypothetical
protein W04A8.7 protein.
Length = 1792
Score = 25.4 bits (53), Expect = 8.4
Identities = 11/27 (40%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Frame = -1
Query: 171 EPTLSGLP-CRAHDHGRDHDRVHEDRR 94
+P + G+P R HD G DH H R
Sbjct: 422 DPLIYGMPEDRRHDEGPDHHHHHHHHR 448
>AL132858-6|CAB60475.1| 412|Caenorhabditis elegans Hypothetical
protein Y113G7A.11 protein.
Length = 412
Score = 25.4 bits (53), Expect = 8.4
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +3
Query: 147 KEDQKEWVPVTKLGRLXREEKSTNSRAFTCFFTIKES 257
K+DQK W P ++L ++ K SR + +FT ++S
Sbjct: 278 KKDQKRWFPESQLHKVEFIRKG-GSRDWKNYFTREQS 313
>AB016796-1|BAA74732.1| 441|Caenorhabditis elegans Seryl-tRNA
synthetase protein.
Length = 441
Score = 25.4 bits (53), Expect = 8.4
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +1
Query: 1 EPIVQQWRTLLQPVDVA 51
E +VQ WR+LL P D +
Sbjct: 150 EKLVQTWRSLLHPTDAS 166
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,302,430
Number of Sequences: 27780
Number of extensions: 76074
Number of successful extensions: 236
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 230
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 235
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 344570176
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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