Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30557X
         (312 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    21   3.5  
EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...    21   3.5  
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    21   3.5  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    21   3.5  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   4.6  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   4.6  
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    20   6.0  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              20   8.0  

>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 3.5
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +1

Query: 205 KNRQTREHLLVS 240
           KN QTREH L++
Sbjct: 129 KNGQTREHALLA 140


>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score = 21.0 bits (42), Expect = 3.5
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +1

Query: 205 KNRQTREHLLVS 240
           KN QTREH L++
Sbjct: 56  KNGQTREHALLA 67


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 21.0 bits (42), Expect = 3.5
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +1

Query: 205 KNRQTREHLLVS 240
           KN QTREH L++
Sbjct: 72  KNGQTREHALLA 83


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 3.5
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +1

Query: 205 KNRQTREHLLVS 240
           KN QTREH L++
Sbjct: 129 KNGQTREHALLA 140


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 20.6 bits (41), Expect = 4.6
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -1

Query: 108 HEDRRGLYLHRVIRIR 61
           HED+RG Y   +  IR
Sbjct: 495 HEDKRGCYQLAINHIR 510


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 20.6 bits (41), Expect = 4.6
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -1

Query: 108 HEDRRGLYLHRVIRIR 61
           HED+RG Y   +  IR
Sbjct: 585 HEDKRGCYQLAINHIR 600


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
          finger domain-Z1 isoform protein.
          Length = 111

 Score = 20.2 bits (40), Expect = 6.0
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = -1

Query: 84 LHRVIRIRRENRHVHRLEQRPPLLN 10
          L  + R+RR  ++VH    + P+ N
Sbjct: 12 LTSLTRLRRHIQNVHTRPSKEPICN 36


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 19.8 bits (39), Expect = 8.0
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -2

Query: 311  HDL*NSSFRDGRGRN 267
            HD  NSSF D +  N
Sbjct: 1867 HDQNNSSFNDSKESN 1881


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 61,963
Number of Sequences: 438
Number of extensions: 1048
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6595479
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)