Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30557X
(312 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S ri... 33 0.031
At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) simila... 31 0.16
At1g58983.1 68414.m06666 40S ribosomal protein S2, putative simi... 31 0.16
At1g58684.1 68414.m06657 40S ribosomal protein S2, putative 31 0.16
At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) simila... 31 0.16
At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C) 29 0.87
At5g38620.1 68418.m04671 MADS-box protein (AGL73) contains Pfam ... 27 2.0
At4g32350.1 68417.m04605 expressed protein contains Pfam profile... 27 2.0
At5g47430.1 68418.m05844 expressed protein 27 3.5
At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit... 27 3.5
At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit... 27 3.5
At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit... 27 3.5
At1g80480.1 68414.m09427 PRLI-interacting factor L, putative sim... 26 6.1
At5g50860.1 68418.m06302 protein kinase family protein contains ... 25 8.1
At5g25060.1 68418.m02970 RNA recognition motif (RRM)-containing ... 25 8.1
At3g61590.1 68416.m06898 F-box family protein contains weak hit ... 25 8.1
At1g49870.1 68414.m05591 expressed protein ; expression supporte... 25 8.1
At1g22860.1 68414.m02854 TGF beta receptor associated protein-re... 25 8.1
>At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S
ribosomal protein S2 - Arabidopsis thaliana,
SWISSPROT:RS2_ARATH
Length = 276
Score = 33.5 bits (73), Expect = 0.031
Identities = 13/21 (61%), Positives = 18/21 (85%)
Frame = +3
Query: 153 DQKEWVPVTKLGRLXREEKST 215
++++WVPVTKLGRL +E K T
Sbjct: 41 EEEKWVPVTKLGRLVKEGKIT 61
>At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) similar
to ribosomal protein S2 GI:430711 from [Drosophila
melanogaster]
Length = 284
Score = 31.1 bits (67), Expect = 0.16
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = +3
Query: 153 DQKEWVPVTKLGRLXREEKST 215
++ +WVPVTKLGRL + K T
Sbjct: 49 EETKWVPVTKLGRLVADNKIT 69
>At1g58983.1 68414.m06666 40S ribosomal protein S2, putative similar
to ribosomal protein S2 GI:939717 from [Urechis caupo]
Length = 284
Score = 31.1 bits (67), Expect = 0.16
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = +3
Query: 153 DQKEWVPVTKLGRLXREEKST 215
++ +WVPVTKLGRL + K T
Sbjct: 49 EETKWVPVTKLGRLVADNKIT 69
>At1g58684.1 68414.m06657 40S ribosomal protein S2, putative
Length = 284
Score = 31.1 bits (67), Expect = 0.16
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = +3
Query: 153 DQKEWVPVTKLGRLXREEKST 215
++ +WVPVTKLGRL + K T
Sbjct: 49 EETKWVPVTKLGRLVADNKIT 69
>At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) similar
to ribosomal protein S2 GI:939717 from (Urechis caupo)
Length = 284
Score = 31.1 bits (67), Expect = 0.16
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = +3
Query: 153 DQKEWVPVTKLGRLXREEKST 215
++ +WVPVTKLGRL + K T
Sbjct: 49 EETKWVPVTKLGRLVADNKIT 69
>At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C)
Length = 285
Score = 28.7 bits (61), Expect = 0.87
Identities = 10/14 (71%), Positives = 14/14 (100%)
Frame = +3
Query: 153 DQKEWVPVTKLGRL 194
++++WVPVTKLGRL
Sbjct: 50 EEEKWVPVTKLGRL 63
>At5g38620.1 68418.m04671 MADS-box protein (AGL73) contains Pfam
profile PF00319: SRF-type transcription factor
(DNA-binding and dimerisation domain)
Length = 349
Score = 27.5 bits (58), Expect = 2.0
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +1
Query: 163 SGFLSPNSAVXFAKKNRQTREHLLVSLQSKNL 258
S FLS V K N++TRE + + L KNL
Sbjct: 74 SAFLSGKRPVSAPKDNKETREDVGICLTRKNL 105
>At4g32350.1 68417.m04605 expressed protein contains Pfam profile:
PF03398 eukaryotic protein of unknown function, DUF292
Length = 732
Score = 27.5 bits (58), Expect = 2.0
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = -3
Query: 289 SGTGEEEINDLDSLIVKKQVN 227
+G G E+ND+D+ +K+Q N
Sbjct: 568 NGAGHHEVNDIDNASLKRQTN 588
>At5g47430.1 68418.m05844 expressed protein
Length = 879
Score = 26.6 bits (56), Expect = 3.5
Identities = 14/39 (35%), Positives = 16/39 (41%)
Frame = -1
Query: 135 DHGRDHDRVHEDRRGLYLHRVIRIRRENRHVHRLEQRPP 19
+H R DR EDR + H R H HR PP
Sbjct: 718 EHDRTRDRRDEDRSRDHRHHRGETERSQHH-HRKRSEPP 755
>At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 565
Score = 26.6 bits (56), Expect = 3.5
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = -1
Query: 126 RDHDRVHEDRRGLYLHRVIRIRRENRHVHRLEQRPP 19
RDHDR +DR G R R R ++R R R P
Sbjct: 130 RDHDRRRDDRGGRRSRR-SRSRSKDRSERRTRSRSP 164
>At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 542
Score = 26.6 bits (56), Expect = 3.5
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = -1
Query: 126 RDHDRVHEDRRGLYLHRVIRIRRENRHVHRLEQRPP 19
RDHDR +DR G R R R ++R R R P
Sbjct: 130 RDHDRRRDDRGGRRSRR-SRSRSKDRSERRTRSRSP 164
>At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 573
Score = 26.6 bits (56), Expect = 3.5
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = -1
Query: 126 RDHDRVHEDRRGLYLHRVIRIRRENRHVHRLEQRPP 19
RDHDR +DR G R R R ++R R R P
Sbjct: 130 RDHDRRRDDRGGRRSRR-SRSRSKDRSERRTRSRSP 164
>At1g80480.1 68414.m09427 PRLI-interacting factor L, putative
similar to PRLI-interacting factor L [Arabidopsis
thaliana] GI:11139268; contains Pfam profile PF02492:
Cobalamin synthesis protein/P47K
Length = 444
Score = 25.8 bits (54), Expect = 6.1
Identities = 9/20 (45%), Positives = 10/20 (50%)
Frame = -1
Query: 138 HDHGRDHDRVHEDRRGLYLH 79
HDH DHD H D + H
Sbjct: 320 HDHNHDHDHHHHDGHDHHHH 339
>At5g50860.1 68418.m06302 protein kinase family protein contains
PF00069: Protein kinase domain
Length = 580
Score = 25.4 bits (53), Expect = 8.1
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = -3
Query: 280 GEEEINDLDSLIVKKQVNALEFVDFSS-RXRRPSLVTGTHSFW 155
GE++ DLDS+ ++ + DFS+ RRP + T W
Sbjct: 49 GEKKKKDLDSIQIQPERRTWHTGDFSAGSSRRPGMSLRTPEGW 91
>At5g25060.1 68418.m02970 RNA recognition motif (RRM)-containing
protein KIAA0332 - Homo sapiens, EMBL:AB002330
Length = 946
Score = 25.4 bits (53), Expect = 8.1
Identities = 18/44 (40%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Frame = -1
Query: 168 PTLSGLPCRAHDHGRDHDRV-HEDRRGLYLHRVIRIRRENRHVH 40
P S R HD GRD DR H DR + R RRE H
Sbjct: 882 PRKSSTRERDHDLGRDRDRERHRDRDRQHDLNRDRDRREKSSSH 925
>At3g61590.1 68416.m06898 F-box family protein contains weak hit to
Pfam PF00646: F-box domain; stamina pistilloidia (Stp) -
Pisum sativum, EMBL:AF004843
Length = 411
Score = 25.4 bits (53), Expect = 8.1
Identities = 8/12 (66%), Positives = 11/12 (91%)
Frame = +1
Query: 4 PIVQQWRTLLQP 39
PI +QWRTL++P
Sbjct: 153 PITKQWRTLIEP 164
>At1g49870.1 68414.m05591 expressed protein ; expression supported
by MPSS
Length = 828
Score = 25.4 bits (53), Expect = 8.1
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = -3
Query: 274 EEINDLDSLIVKKQVNALE 218
+ I DL+SL+VKK V+ LE
Sbjct: 478 DPIPDLESLLVKKHVSGLE 496
>At1g22860.1 68414.m02854 TGF beta receptor associated
protein-related contains weak similarity to TGF beta
receptor associated protein-1 [Homo sapiens]
gi|3150052|gb|AAC16903
Length = 947
Score = 25.4 bits (53), Expect = 8.1
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -1
Query: 114 RVHEDRRGLYLHRVIRIRRENRHVHRLEQR 25
RVH R+G +H + R + + RLE+R
Sbjct: 852 RVHHHRQGQIVHNISRALDVDSRLARLEER 881
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,054,082
Number of Sequences: 28952
Number of extensions: 72768
Number of successful extensions: 246
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 236
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 243
length of database: 12,070,560
effective HSP length: 70
effective length of database: 10,043,920
effective search space used: 331449360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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