Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30556
         (554 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF014219-1|ABJ91581.1|  647|Anopheles gambiae cation proton anti...    23   8.9  
AY705401-1|AAU12510.1|  490|Anopheles gambiae nicotinic acetylch...    23   8.9  
AY705400-1|AAU12509.1|  490|Anopheles gambiae nicotinic acetylch...    23   8.9  

>EF014219-1|ABJ91581.1|  647|Anopheles gambiae cation proton
           antiporter protein.
          Length = 647

 Score = 22.6 bits (46), Expect = 8.9
 Identities = 11/31 (35%), Positives = 21/31 (67%), Gaps = 3/31 (9%)
 Frame = +3

Query: 81  KNLHYS*IIKMICKL---LSNYKGALINSLT 164
           + +HY+ ++KM+C L   L+   GA++ S+T
Sbjct: 547 EEVHYAELVKMVCILSIILTAPLGAILISVT 577


>AY705401-1|AAU12510.1|  490|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 6 protein.
          Length = 490

 Score = 22.6 bits (46), Expect = 8.9
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +3

Query: 111 MICKLLSNYKGALINSLTKRYLNNNIACITKIHREV 218
           ++C L+   K +L     KR LNN +A    + R V
Sbjct: 7   VLCLLVIYIKDSLQGPHEKRLLNNLLATYNTLERPV 42


>AY705400-1|AAU12509.1|  490|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 6 protein.
          Length = 490

 Score = 22.6 bits (46), Expect = 8.9
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +3

Query: 111 MICKLLSNYKGALINSLTKRYLNNNIACITKIHREV 218
           ++C L+   K +L     KR LNN +A    + R V
Sbjct: 7   VLCLLVIYIKDSLQGPHEKRLLNNLLATYNTLERPV 42


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 428,771
Number of Sequences: 2352
Number of extensions: 6834
Number of successful extensions: 18
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 51722361
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)