Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30554
         (678 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q08CU6 Cluster: Zgc:152692; n=6; Clupeocephala|Rep: Zgc...    33   6.4  
UniRef50_Q8FFL3 Cluster: Putative uncharacterized protein; n=3; ...    33   6.4  

>UniRef50_Q08CU6 Cluster: Zgc:152692; n=6; Clupeocephala|Rep:
           Zgc:152692 - Danio rerio (Zebrafish) (Brachydanio rerio)
          Length = 259

 Score = 33.1 bits (72), Expect = 6.4
 Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 4/77 (5%)
 Frame = +2

Query: 437 FYLNIICFNVNGLCEISVDRFCIISFSLKIKFSR----IWIFIYLMILFISKQRELFXXX 604
           FY + +  ++  LC IS+DR   I+F L+++  R     WI   L+ +F+     L    
Sbjct: 98  FYYSNLYISIFLLCWISIDRCLAITFPLRVQAFRRQRYAWIICGLVYIFVMTLHSLVLYL 157

Query: 605 XXXXXPKHDHAVRAFFT 655
                P  D   R + T
Sbjct: 158 DKLSDPPDDSEQRCYET 174


>UniRef50_Q8FFL3 Cluster: Putative uncharacterized protein; n=3;
           Escherichia coli|Rep: Putative uncharacterized protein -
           Escherichia coli O6
          Length = 277

 Score = 33.1 bits (72), Expect = 6.4
 Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 2/60 (3%)
 Frame = +3

Query: 93  GDFCDWTHKFFGPGNFKIFHMFIGFARCV--CFVFXXXXXXXXXXXXXXAAVAVTPETYA 266
           GDFCD    FF     K F   + F RCV  CF+               A +A+TP  ++
Sbjct: 186 GDFCDTVGGFFITNVLKTFGAVVPFNRCVKHCFIRINHIVSFSQKRKICARLAITPAGFS 245


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 571,120,323
Number of Sequences: 1657284
Number of extensions: 9785623
Number of successful extensions: 18633
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 18124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18632
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 52479343733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)