Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30553
         (677 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39921| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.0  
SB_22050| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_27977| Best HMM Match : ARID (HMM E-Value=1.6e-26)                  29   4.6  
SB_43651| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  
SB_25976| Best HMM Match : RVT_1 (HMM E-Value=5.3e-22)                 28   6.0  
SB_2114| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.0  
SB_4687| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.0  
SB_51094| Best HMM Match : VWA (HMM E-Value=0)                         25   9.8  

>SB_39921| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 210

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +3

Query: 144 TCVSQNTGTCPESSCACPEISCACPETSCACPESS 248
           T     T   P+++ A PE + A PE + A PE++
Sbjct: 33  TAAPDATTAAPDATTAAPEATTAAPEATTAAPEAT 67



 Score = 29.5 bits (63), Expect = 2.6
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +3

Query: 144 TCVSQNTGTCPESSCACPEISCACPETSCACPESS 248
           T     T   P+++ A P+ + A PE + A PE++
Sbjct: 26  TAAPMETTAAPDATTAAPDATTAAPEATTAAPEAT 60



 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +3

Query: 144 TCVSQNTGTCPESSCACPEISCACPETSCACP 239
           T     T   PE++ A PE + A PE + A P
Sbjct: 40  TAAPDATTAAPEATTAAPEATTAAPEATTAAP 71


>SB_22050| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 233

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +3

Query: 147 CVSQNTGTCPESSCACPEISCACPETSC 230
           CVS      P  + ACP ++ AC   SC
Sbjct: 80  CVSYRYDRVPYLTSACPNVTSACQRVSC 107


>SB_27977| Best HMM Match : ARID (HMM E-Value=1.6e-26)
          Length = 1536

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +3

Query: 147  CVSQNTGTCPESSCACPEISCACPETSCACPESS 248
            C+  N   C + +  C   S  CP+ S  CP+S+
Sbjct: 998  CLKDNV-MCSKDAVTCQNRSVTCPKYSVLCPDSN 1030



 Score = 27.9 bits (59), Expect = 8.0
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +3

Query: 153  SQNTGTCPESSCACPEISCACPETSCACPESS 248
            S++  TC   S  CP+ S  CP+++    E+S
Sbjct: 1006 SKDAVTCQNRSVTCPKYSVLCPDSNVEPNETS 1037


>SB_43651| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 274

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +3

Query: 156 QNTGTCPESSCACPEISCACPETSCACPESS 248
           +   T PE + A PE +   PE +  CPE +
Sbjct: 84  EGNSTSPEGNSASPEGNSTSPEGNSTCPEGN 114


>SB_25976| Best HMM Match : RVT_1 (HMM E-Value=5.3e-22)
          Length = 1421

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +3

Query: 147 CVSQNTGTCPESSCACPEISCACPETSCAC 236
           C   +TG  P ++C C  I    P+T+C C
Sbjct: 892 CCLMDTGL-PHTACQCCLIGTGLPQTACQC 920


>SB_2114| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 97

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -1

Query: 548 AWVWQFWLLLPQPFS*RFSTRLSLQC 471
           +WVW  W+L+ QP S R     +++C
Sbjct: 4   SWVWPLWMLICQPHS-RMKEMPNIEC 28


>SB_4687| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 318

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = -3

Query: 675 PMFTFYNLPLSLKCFSNSFTTFFCPLIPVFLGFGAIFNLE 556
           P+ T Y L   L CFS     +F  +  + +GFGA+F L+
Sbjct: 140 PVMTLYILHSPL-CFSADDLGYFSAVRFLVMGFGAVFGLK 178


>SB_51094| Best HMM Match : VWA (HMM E-Value=0)
          Length = 3544

 Score = 24.6 bits (51), Expect(2) = 9.8
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +3

Query: 156  QNTGTCPESSCACP 197
            Q+ G C ES C CP
Sbjct: 1524 QHGGVCTESGCMCP 1537



 Score = 21.0 bits (42), Expect(2) = 9.8
 Identities = 6/11 (54%), Positives = 7/11 (63%)
 Frame = +3

Query: 213  CPETSCACPES 245
            C E+ C CP S
Sbjct: 1529 CTESGCMCPSS 1539


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,541,223
Number of Sequences: 59808
Number of extensions: 126095
Number of successful extensions: 645
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 444
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 632
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1745338465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)