Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30551X
         (317 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC212.01c |||S. pombe specific DUF999 family protein 2|Schizos...    26   1.6  
SPBCPT2R1.04c |||S. pombe specific DUF999 protein family 10|Schi...    26   1.6  
SPAC750.06c |||S. pombe specific DUF999 protein family 4|Schizos...    26   1.6  
SPBCPT2R1.01c ||SPBPB2B2.20c|S. pombe specific DUF999 protein fa...    24   4.8  
SPBC1348.01 |||S. pombe specific DUF999 protein family 5|Schizos...    24   4.8  

>SPAC212.01c |||S. pombe specific DUF999 family protein
           2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 280

 Score = 25.8 bits (54), Expect = 1.6
 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 6/52 (11%)
 Frame = +1

Query: 130 LGPFVVALEDLEGFIGCVLPGLI------LATVXSTPLGFRLLTPGGSC*RN 267
           LG  + AL  +   +G  + GL+      L  +    LGF+++TPG  C  N
Sbjct: 194 LGMIIAALGMIIAALGATITGLLYFGHWALYKLVILSLGFKIVTPGDVCVSN 245


>SPBCPT2R1.04c |||S. pombe specific DUF999 protein family
           10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 280

 Score = 25.8 bits (54), Expect = 1.6
 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 6/52 (11%)
 Frame = +1

Query: 130 LGPFVVALEDLEGFIGCVLPGLI------LATVXSTPLGFRLLTPGGSC*RN 267
           LG  + AL  +   +G  + GL+      L  +    LGF+++TPG  C  N
Sbjct: 194 LGMIIAALGMIIAALGATITGLLYFGHWALYKLVILSLGFKIVTPGDVCVSN 245


>SPAC750.06c |||S. pombe specific DUF999 protein family
           4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 280

 Score = 25.8 bits (54), Expect = 1.6
 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 6/52 (11%)
 Frame = +1

Query: 130 LGPFVVALEDLEGFIGCVLPGLI------LATVXSTPLGFRLLTPGGSC*RN 267
           LG  + AL  +   +G  + GL+      L  +    LGF+++TPG  C  N
Sbjct: 194 LGMIIAALGMIIAALGATITGLLYFGHWALYKLVILSLGFKIVTPGDVCVSN 245


>SPBCPT2R1.01c ||SPBPB2B2.20c|S. pombe specific DUF999 protein
           family 9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 269

 Score = 24.2 bits (50), Expect = 4.8
 Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 6/52 (11%)
 Frame = +1

Query: 130 LGPFVVALEDLEGFIGCVLPGLI------LATVXSTPLGFRLLTPGGSC*RN 267
           LG  +  L  +   +G  + GL+      L  +    LGF+++TPG  C  N
Sbjct: 183 LGMIIAVLGMIIAALGATITGLLYFGHWALYKLVILSLGFKIVTPGDVCVSN 234


>SPBC1348.01 |||S. pombe specific DUF999 protein family
           5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 269

 Score = 24.2 bits (50), Expect = 4.8
 Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 6/52 (11%)
 Frame = +1

Query: 130 LGPFVVALEDLEGFIGCVLPGLI------LATVXSTPLGFRLLTPGGSC*RN 267
           LG  +  L  +   +G  + GL+      L  +    LGF+++TPG  C  N
Sbjct: 183 LGMIIAVLGMIIAALGATITGLLYFGHWALYKLVILSLGFKIVTPGDVCVSN 234


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,153,247
Number of Sequences: 5004
Number of extensions: 18331
Number of successful extensions: 35
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 85983492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)