Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30551X
         (317 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0896 + 22373348-22374946                                         31   0.26 
09_04_0254 + 16131779-16132475,16132609-16132768,16132944-161329...    26   5.6  
08_02_0880 + 22203440-22204324,22204763-22204876,22204964-222054...    26   5.6  
01_03_0126 + 12741397-12743022                                         26   5.6  

>07_03_0896 + 22373348-22374946
          Length = 532

 Score = 30.7 bits (66), Expect = 0.26
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +1

Query: 127 CLGPFVVALEDLEGFIGCVLPGLILATVXSTPLGFR 234
           C GP +V+L     F GC+  G +L T+  + LG R
Sbjct: 112 CAGPALVSLPASSFFAGCLAGGFLLTTLADSLLGRR 147


>09_04_0254 +
           16131779-16132475,16132609-16132768,16132944-16132992,
           16133158-16133271,16133434-16133958,16135538-16135969,
           16138882-16138956,16139530-16139625,16140610-16140725,
           16140822-16140992,16141080-16141239,16141328-16141513,
           16141624-16141752,16141837-16141915,16142034-16142143
          Length = 1032

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +1

Query: 178 CVLPGLILATVXSTPLGFR 234
           C+LPG +L    S P GFR
Sbjct: 718 CLLPGNVLTITMSKPYGFR 736


>08_02_0880 +
           22203440-22204324,22204763-22204876,22204964-22205455,
           22205646-22205819,22206589-22206978,22209927-22210022,
           22210645-22210760,22210872-22211042,22211126-22211285,
           22211388-22211573,22211665-22211793,22211918-22211996,
           22212159-22212268
          Length = 1033

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +1

Query: 178 CVLPGLILATVXSTPLGFR 234
           C+LPG +L    S P GFR
Sbjct: 719 CLLPGNVLTITMSKPYGFR 737


>01_03_0126 + 12741397-12743022
          Length = 541

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +1

Query: 133 GPFVVALEDLEGFIGCVLPGLILATVXSTPLGFR 234
           GP +V+L     F G +  G +LAT+  T LG R
Sbjct: 121 GPALVSLPASSFFAGNLAGGFLLATLADTHLGRR 154


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,374,516
Number of Sequences: 37544
Number of extensions: 118761
Number of successful extensions: 202
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 398975940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)