Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30551X
         (317 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37086| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.12 
SB_30283| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   1.4  
SB_47680| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.6  

>SB_37086| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 582

 Score = 31.9 bits (69), Expect = 0.12
 Identities = 15/29 (51%), Positives = 16/29 (55%)
 Frame = -1

Query: 248 PGVNNLKPKGVLXTVARIRPGKTQPIKPS 162
           P VNN +P     T   IRP  T PIKPS
Sbjct: 231 PKVNNTRPVTASSTPVPIRPAMTTPIKPS 259


>SB_30283| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1417

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = -1

Query: 248  PGVNNLKPKGVLXTVARIRPG-KTQPIKPSRSSNATT 141
            P    +KP     +   I+P   T PIKPS S+ +TT
Sbjct: 1259 PSTTPIKPSPSTTSTTPIKPSPSTNPIKPSPSTTSTT 1295


>SB_47680| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2749

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -1

Query: 227 PKGVLXTVARIRPGKTQPIKPSRSSNATTK 138
           PKG++   A+  P  +QP  P ++ +AT +
Sbjct: 566 PKGIVAVEAKAGPEVSQPTPPPQTPSATRR 595


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,412,646
Number of Sequences: 59808
Number of extensions: 132150
Number of successful extensions: 276
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 271
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 276
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 413004273
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)