Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30551X
         (317 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92813-8|CAB07290.1| 1057|Caenorhabditis elegans Hypothetical pr...    27   3.9  
AL032658-5|CAA21748.1| 1057|Caenorhabditis elegans Hypothetical ...    27   3.9  
AF129126-1|AAD25089.2| 1057|Caenorhabditis elegans POD-1 protein.      27   3.9  
Z75530-8|CAA99792.2|  405|Caenorhabditis elegans Hypothetical pr...    26   5.1  
Z81079-5|CAB03082.2|  505|Caenorhabditis elegans Hypothetical pr...    26   6.8  
Z68879-3|CAA93084.1|  532|Caenorhabditis elegans Hypothetical pr...    26   6.8  
DQ917240-1|ABI94563.1| 1797|Caenorhabditis elegans four domain-t...    26   6.8  
AY555271-1|AAS65871.2| 1831|Caenorhabditis elegans four domain-t...    26   6.8  
AJ238443-1|CAB41469.1|  454|Caenorhabditis elegans TBP-like fact...    26   6.8  
AF228692-1|AAF59926.1|  505|Caenorhabditis elegans TBP-like fact...    26   6.8  
AF045640-5|AAM81121.1| 1913|Caenorhabditis elegans Novel channel...    26   6.8  
AF045640-4|AAU05590.1| 1861|Caenorhabditis elegans Novel channel...    26   6.8  
AF045640-6|AAU05588.1| 1562|Caenorhabditis elegans Novel channel...    25   8.9  

>Z92813-8|CAB07290.1| 1057|Caenorhabditis elegans Hypothetical protein
            Y76A2B.1 protein.
          Length = 1057

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = -1

Query: 272  WMLR*QLPPGVNNLKPKGVLXTVARIRPGKTQPIKPSRSSNAT 144
            WML  Q  P   +LKP GV  ++ R      +  +   SS+ T
Sbjct: 929  WMLGEQAAPVFRSLKPDGVFSSIPRAITASVRHSEMPSSSSTT 971


>AL032658-5|CAA21748.1| 1057|Caenorhabditis elegans Hypothetical
            protein Y76A2B.1 protein.
          Length = 1057

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = -1

Query: 272  WMLR*QLPPGVNNLKPKGVLXTVARIRPGKTQPIKPSRSSNAT 144
            WML  Q  P   +LKP GV  ++ R      +  +   SS+ T
Sbjct: 929  WMLGEQAAPVFRSLKPDGVFSSIPRAITASVRHSEMPSSSSTT 971


>AF129126-1|AAD25089.2| 1057|Caenorhabditis elegans POD-1 protein.
          Length = 1057

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = -1

Query: 272  WMLR*QLPPGVNNLKPKGVLXTVARIRPGKTQPIKPSRSSNAT 144
            WML  Q  P   +LKP GV  ++ R      +  +   SS+ T
Sbjct: 929  WMLGEQAAPVFRSLKPDGVFSSIPRAITASVRHSEMPSSSSTT 971


>Z75530-8|CAA99792.2|  405|Caenorhabditis elegans Hypothetical
           protein C47E8.3 protein.
          Length = 405

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +3

Query: 30  YFNDILNYFKTVCSNLE*PI*FLISRLI 113
           Y NDI++ F  + S L  PI F  +RLI
Sbjct: 306 YLNDIVSIFTLLASCLRFPIYFCCNRLI 333


>Z81079-5|CAB03082.2|  505|Caenorhabditis elegans Hypothetical
           protein F39H11.2 protein.
          Length = 505

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = -1

Query: 257 QLPPGVNNLKPKGVLXTVARIRPGKTQPIKPSRSSNATTKG 135
           QLPPGV  ++  GV     R  PG  QP++ +     T  G
Sbjct: 55  QLPPGVRQIQQNGVGPAYVRQVPG-GQPMQVNFGHPGTIAG 94


>Z68879-3|CAA93084.1|  532|Caenorhabditis elegans Hypothetical
           protein K08F4.4 protein.
          Length = 532

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -1

Query: 242 VNNLKPKGVLXTVARIRPGKTQPIKPSRSSNATT 141
           + N+ P+ ++    +    +  PIKPSR  NAT+
Sbjct: 134 IRNMFPENIIQATFQQVQTEYMPIKPSRVRNATS 167


>DQ917240-1|ABI94563.1| 1797|Caenorhabditis elegans four domain-type
            voltage-gatedion channel alpha-1 subunit protein.
          Length = 1797

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = +3

Query: 30   YFNDILNYFKTVCSNLE*PI*FLISRLIKIKYVSWSLCSSI 152
            Y+N+ +NY++T C N    I +  S  + I Y+  +L  ++
Sbjct: 1411 YWNEGMNYWETDCGNFYGAIIYFCSFYLIITYIVRNLLVAV 1451


>AY555271-1|AAS65871.2| 1831|Caenorhabditis elegans four domain-type
            voltage-gatedion channel alpha-1 subunit protein.
          Length = 1831

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = +3

Query: 30   YFNDILNYFKTVCSNLE*PI*FLISRLIKIKYVSWSLCSSI 152
            Y+N+ +NY++T C N    I +  S  + I Y+  +L  ++
Sbjct: 1445 YWNEGMNYWETDCGNFYGAIIYFCSFYLIITYIVRNLLVAV 1485


>AJ238443-1|CAB41469.1|  454|Caenorhabditis elegans TBP-like factor
           protein.
          Length = 454

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = -1

Query: 257 QLPPGVNNLKPKGVLXTVARIRPGKTQPIKPSRSSNATTKG 135
           QLPPGV  ++  GV     R  PG  QP++ +     T  G
Sbjct: 55  QLPPGVRQIQQNGVGPAYVRQVPG-GQPMQVNFGHPGTIAG 94


>AF228692-1|AAF59926.1|  505|Caenorhabditis elegans TBP-like factor
           protein.
          Length = 505

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = -1

Query: 257 QLPPGVNNLKPKGVLXTVARIRPGKTQPIKPSRSSNATTKG 135
           QLPPGV  ++  GV     R  PG  QP++ +     T  G
Sbjct: 55  QLPPGVRQIQQNGVGPAYVRQVPG-GQPMQVNFGHPGTIAG 94


>AF045640-5|AAM81121.1| 1913|Caenorhabditis elegans Novel channel
            type/putative nematodecalcium channel protein 1, isoform
            c protein.
          Length = 1913

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = +3

Query: 30   YFNDILNYFKTVCSNLE*PI*FLISRLIKIKYVSWSLCSSI 152
            Y+N+ +NY++T C N    I +  S  + I Y+  +L  ++
Sbjct: 1556 YWNEGMNYWETDCGNFYGAIIYFCSFYLIITYIVRNLLVAV 1596


>AF045640-4|AAU05590.1| 1861|Caenorhabditis elegans Novel channel
            type/putative nematodecalcium channel protein 1, isoform
            d protein.
          Length = 1861

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = +3

Query: 30   YFNDILNYFKTVCSNLE*PI*FLISRLIKIKYVSWSLCSSI 152
            Y+N+ +NY++T C N    I +  S  + I Y+  +L  ++
Sbjct: 1475 YWNEGMNYWETDCGNFYGAIIYFCSFYLIITYIVRNLLVAV 1515


>AF045640-6|AAU05588.1| 1562|Caenorhabditis elegans Novel channel
            type/putative nematodecalcium channel protein 1, isoform
            a protein.
          Length = 1562

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +3

Query: 30   YFNDILNYFKTVCSNLE*PI*FLISRLIKIKYV 128
            Y+N+ +NY++T C N    I +  S  + I Y+
Sbjct: 1503 YWNEGMNYWETDCGNFYGAIIYFCSFYLIITYI 1535


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,398,250
Number of Sequences: 27780
Number of extensions: 106568
Number of successful extensions: 196
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 366105812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)