Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30551X
         (317 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g79360.1 68414.m09248 transporter-related low similarity to S...    36   0.006
At1g16390.1 68414.m01960 organic cation transporter-related low ...    29   0.51 
At1g25350.1 68414.m03145 glutamine-tRNA ligase, putative / gluta...    26   6.3  

>At1g79360.1 68414.m09248 transporter-related low similarity to
           SP|O76082 Organic cation/carnitine transporter 2 (Solute
           carrier family 22, member 5) (High-affinity
           sodium-dependent carnitine cotransporter) {Homo
           sapiens}; contains Pfam profile PF00083: major
           facilitator superfamily protein
          Length = 527

 Score = 35.9 bits (79), Expect = 0.006
 Identities = 14/34 (41%), Positives = 22/34 (64%)
 Frame = +1

Query: 127 CLGPFVVALEDLEGFIGCVLPGLILATVXSTPLG 228
           C G FV  L +   F+GC++ GL+L+T+  + LG
Sbjct: 107 CAGSFVKGLPESSFFVGCLIGGLVLSTLADSSLG 140


>At1g16390.1 68414.m01960 organic cation transporter-related low
           similarity to Organic cation/carnitine transporter 2
           (Solute carrier family 22, member 5) (High-affinity
           sodium-dependent carnitine cotransporter) from {Homo
           sapiens} SP|O76082, {Rattus norvegicus} SP|O70594;
           contains Pfam profile PF00083: major facilitator
           superfamily protein
          Length = 518

 Score = 29.5 bits (63), Expect = 0.51
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +1

Query: 127 CLGPFVVALEDLEGFIGCVLPGLILATVXSTPLG 228
           C G F+        F+GC++ GL L+T+  + LG
Sbjct: 115 CAGSFLKGFPASSFFLGCLIGGLALSTLADSSLG 148


>At1g25350.1 68414.m03145 glutamine-tRNA ligase, putative /
           glutaminyl-tRNA synthetase, putative / GlnRS, putative
           similar to tRNA-glutamine synthetase GI:2995454 from
           [Lupinus luteus]
          Length = 795

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 13/21 (61%), Positives = 15/21 (71%)
 Frame = -1

Query: 230 KPKGVLXTVARIRPGKTQPIK 168
           KPKGVL  VA   PG+ +PIK
Sbjct: 688 KPKGVLHWVAESSPGE-EPIK 707


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,999,773
Number of Sequences: 28952
Number of extensions: 97012
Number of successful extensions: 205
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 205
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 340508912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)