Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30549X
(313 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3H5.10 |rpl3202|rpl32-2, rpl32|60S ribosomal protein L32|Sch... 55 3e-09
SPBC16C6.11 |rpl3201|rpl32-1|60S ribosomal protein L32|Schizosac... 52 2e-08
SPAC1250.04c |atl1||alkyltransferase-like protein Atl1|Schizosac... 28 0.28
SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces pom... 27 0.50
SPBC336.10c |tif512||translation initiation factor|Schizosacchar... 25 2.6
SPAC26H5.10c |tif51||translation initiation factor eIF5A|Schizos... 25 2.6
SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase Ub... 25 3.5
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch... 25 3.5
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 24 4.6
SPAC1F7.10 |||hydantoin racemase family |Schizosaccharomyces pom... 24 4.6
SPBPJ4664.05 |||conserved fungal protein|Schizosaccharomyces pom... 24 6.1
SPAC17H9.06c |||conserved fungal protein|Schizosaccharomyces pom... 23 8.1
SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyc... 23 8.1
>SPAC3H5.10 |rpl3202|rpl32-2, rpl32|60S ribosomal protein
L32|Schizosaccharomyces pombe|chr 1|||Manual
Length = 127
Score = 54.8 bits (126), Expect = 3e-09
Identities = 23/35 (65%), Positives = 29/35 (82%)
Frame = +3
Query: 78 IVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVR 182
I+KKRTK F RHQSDR+ ++ +WRKPRGID+ VR
Sbjct: 6 IIKKRTKPFKRHQSDRFKRVGESWRKPRGIDSCVR 40
Score = 34.3 bits (75), Expect = 0.004
Identities = 13/24 (54%), Positives = 18/24 (75%)
Frame = +2
Query: 182 QRFKGQYLMPNIGYGSNKMTRHML 253
+RF+G MP IGYG+NK TR+ +
Sbjct: 41 RRFRGTISMPKIGYGNNKKTRYCM 64
>SPBC16C6.11 |rpl3201|rpl32-1|60S ribosomal protein
L32|Schizosaccharomyces pombe|chr 2|||Manual
Length = 127
Score = 52.4 bits (120), Expect = 2e-08
Identities = 23/35 (65%), Positives = 28/35 (80%)
Frame = +3
Query: 78 IVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVR 182
IVKKRTK F RHQSD + ++ +WRKPRGID+ VR
Sbjct: 6 IVKKRTKPFKRHQSDLFKRVGESWRKPRGIDSCVR 40
Score = 34.3 bits (75), Expect = 0.004
Identities = 13/24 (54%), Positives = 18/24 (75%)
Frame = +2
Query: 182 QRFKGQYLMPNIGYGSNKMTRHML 253
+RF+G MP IGYG+NK TR+ +
Sbjct: 41 RRFRGTISMPKIGYGNNKKTRYCM 64
>SPAC1250.04c |atl1||alkyltransferase-like protein
Atl1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 108
Score = 28.3 bits (60), Expect = 0.28
Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Frame = +2
Query: 5 HRVVHCR--VS*RNIQDGYKTCLQADNRQKEDEEIYQASIG 121
HRV++ R +S R+I G + Q D ++E EIYQ S+G
Sbjct: 57 HRVINSRGTISKRDISAGEQR--QKDRLEEEGVEIYQTSLG 95
>SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 558
Score = 27.5 bits (58), Expect = 0.50
Identities = 13/23 (56%), Positives = 17/23 (73%), Gaps = 2/23 (8%)
Frame = -3
Query: 152 TPIPLKFV--IAIRLMPDKSLRP 90
TP+P+KFV IA+ MP +LRP
Sbjct: 427 TPVPIKFVADIAMHSMPRVALRP 449
>SPBC336.10c |tif512||translation initiation
factor|Schizosaccharomyces pombe|chr 2|||Manual
Length = 157
Score = 25.0 bits (52), Expect = 2.6
Identities = 9/29 (31%), Positives = 15/29 (51%)
Frame = +2
Query: 38 NIQDGYKTCLQADNRQKEDEEIYQASIGS 124
NI DGY + D K+D + + +G+
Sbjct: 95 NIDDGYLNLMTTDGTTKDDVRLPEGELGN 123
>SPAC26H5.10c |tif51||translation initiation factor
eIF5A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 157
Score = 25.0 bits (52), Expect = 2.6
Identities = 9/29 (31%), Positives = 15/29 (51%)
Frame = +2
Query: 38 NIQDGYKTCLQADNRQKEDEEIYQASIGS 124
NI DGY + D K+D + + +G+
Sbjct: 95 NIDDGYLNLMTTDGTTKDDVRLPEGELGN 123
>SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase
Ubp21|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1129
Score = 24.6 bits (51), Expect = 3.5
Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Frame = +1
Query: 4 SPRGSLSRFLKKHTRWL*DL-FTGRQSSKRGRRDLSGINRIAMTNLRGIGVNLEVLTTES 180
SP SLS ++++H +W D+ T + K G D+ N + +G +++ E
Sbjct: 741 SPISSLSEWIREHLKWSSDVPITYYEEIKTGMVDVLDPNASFEKSEIQVG---DIICFEK 797
Query: 181 AAIQGSILDAQH 216
+ S D H
Sbjct: 798 KLVHDSSSDTSH 809
>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1092
Score = 24.6 bits (51), Expect = 3.5
Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Frame = +1
Query: 10 RGSLSR--FLKKHTRWL*DLFTGRQSSKRGRRDL 105
RGS SR F KKH RW L + ++ R L
Sbjct: 931 RGSSSRGAFYKKHNRWTEGLISAAKAVARATTTL 964
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 24.2 bits (50), Expect = 4.6
Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Frame = +3
Query: 66 YRP--TIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRSD 188
YRP T+ + + ++ ++ + +RN KP+GI + V SD
Sbjct: 582 YRPSETVFEIGQRGHLKTEAAEIMRKRRNKVKPKGIKSEVASD 624
>SPAC1F7.10 |||hydantoin racemase family |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 238
Score = 24.2 bits (50), Expect = 4.6
Identities = 8/22 (36%), Positives = 13/22 (59%)
Frame = -3
Query: 104 KSLRPLFDDCRPVNRSYSHLVC 39
+S++ + DDC P N +L C
Sbjct: 17 ESVKSVLDDCTPPNVQLEYLTC 38
>SPBPJ4664.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 163
Score = 23.8 bits (49), Expect = 6.1
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = -3
Query: 173 VVNTSRFTPIPLKFVIAIRLMP 108
++ R P+PL F I++ LMP
Sbjct: 48 LIPKDRPVPLPLNFDISVHLMP 69
>SPAC17H9.06c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 601
Score = 23.4 bits (48), Expect = 8.1
Identities = 8/24 (33%), Positives = 15/24 (62%)
Frame = +1
Query: 232 QDDPSYAPNGFRKVLVHNVKELEN 303
+DD S +P K ++ + +E+EN
Sbjct: 270 EDDESSSPEDLLKPIIRSTEEMEN 293
>SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 703
Score = 23.4 bits (48), Expect = 8.1
Identities = 7/18 (38%), Positives = 15/18 (83%)
Frame = +3
Query: 102 FIRHQSDRYDKLKRNWRK 155
FI+H+ D +DKL++ +++
Sbjct: 22 FIQHRLDLFDKLQKEYKE 39
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,216,317
Number of Sequences: 5004
Number of extensions: 20823
Number of successful extensions: 65
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 81889040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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