Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30549X
(313 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0630 + 19104678-19105463,19106169-19106348,19107775-191078... 58 1e-09
09_04_0633 - 19123930-19124009,19124240-19124344,19124453-191245... 54 2e-08
09_04_0632 - 19121654-19121783,19121910-19122091,19122752-19122841 54 2e-08
08_02_1315 + 26083856-26083945,26084093-26084226,26084753-260848... 40 3e-04
08_01_0033 + 244930-245105,245297-245344,245835-246539,246652-24... 29 0.77
12_02_0388 - 18486957-18487016,18487286-18489418,18489985-184904... 26 5.4
07_01_0565 + 4188387-4190570 26 5.4
03_02_0738 - 10824121-10825572 26 7.2
03_02_0155 - 5974118-5974173,5974242-5974314,5974393-5974500,597... 26 7.2
02_04_0203 - 20888010-20888162,20888242-20888469,20888969-208890... 25 9.5
>09_04_0630 +
19104678-19105463,19106169-19106348,19107775-19107864,
19108777-19108958,19109968-19109974,19111763-19111833,
19112188-19112224,19112433-19112603
Length = 507
Score = 58.4 bits (135), Expect = 1e-09
Identities = 27/49 (55%), Positives = 36/49 (73%)
Frame = +3
Query: 36 ETYKMAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVR 182
+TY+M + P+ IVKKR K+F R SDRY LK +WR+P+GID+RVR
Sbjct: 319 DTYEMVV-PLLTKKIVKKRVKQFKRPHSDRYIGLKTSWRRPKGIDSRVR 366
Score = 40.3 bits (90), Expect = 3e-04
Identities = 17/24 (70%), Positives = 20/24 (83%)
Frame = +2
Query: 182 QRFKGQYLMPNIGYGSNKMTRHML 253
++FKG LMPNIGYGS+K TRH L
Sbjct: 367 RKFKGCTLMPNIGYGSDKKTRHYL 390
Score = 30.7 bits (66), Expect = 0.25
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = +1
Query: 247 YAPNGFRKVLVHNVKELE 300
Y PN F+K +VHNV ELE
Sbjct: 389 YLPNKFKKFVVHNVSELE 406
>09_04_0633 -
19123930-19124009,19124240-19124344,19124453-19124543,
19124647-19124709,19126318-19126368,19126878-19126962,
19127102-19127283,19128493-19128582
Length = 248
Score = 54.0 bits (124), Expect = 2e-08
Identities = 26/45 (57%), Positives = 33/45 (73%)
Frame = +3
Query: 48 MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVR 182
MA+ P+ IVKKR K+F R SDRY LK +WR+P+GID+RVR
Sbjct: 1 MAV-PLLTKKIVKKRVKQFKRPHSDRYIGLKTSWRRPKGIDSRVR 44
Score = 40.3 bits (90), Expect = 3e-04
Identities = 17/24 (70%), Positives = 20/24 (83%)
Frame = +2
Query: 182 QRFKGQYLMPNIGYGSNKMTRHML 253
++FKG LMPNIGYGS+K TRH L
Sbjct: 45 RKFKGCTLMPNIGYGSDKKTRHYL 68
Score = 30.7 bits (66), Expect = 0.25
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = +1
Query: 247 YAPNGFRKVLVHNVKELE 300
Y PN F+K +VHNV ELE
Sbjct: 67 YLPNKFKKFVVHNVSELE 84
>09_04_0632 - 19121654-19121783,19121910-19122091,19122752-19122841
Length = 133
Score = 54.0 bits (124), Expect = 2e-08
Identities = 26/45 (57%), Positives = 33/45 (73%)
Frame = +3
Query: 48 MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVR 182
MA+ P+ IVKKR K+F R SDRY LK +WR+P+GID+RVR
Sbjct: 1 MAV-PLLTKKIVKKRVKQFKRPHSDRYIGLKTSWRRPKGIDSRVR 44
Score = 40.3 bits (90), Expect = 3e-04
Identities = 17/24 (70%), Positives = 20/24 (83%)
Frame = +2
Query: 182 QRFKGQYLMPNIGYGSNKMTRHML 253
++FKG LMPNIGYGS+K TRH L
Sbjct: 45 RKFKGCTLMPNIGYGSDKKTRHYL 68
Score = 30.7 bits (66), Expect = 0.25
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = +1
Query: 247 YAPNGFRKVLVHNVKELE 300
Y PN F+K +VHNV ELE
Sbjct: 67 YLPNKFKKFVVHNVSELE 84
>08_02_1315 +
26083856-26083945,26084093-26084226,26084753-26084819,
26085011-26085192,26085315-26085444
Length = 200
Score = 40.3 bits (90), Expect = 3e-04
Identities = 17/24 (70%), Positives = 20/24 (83%)
Frame = +2
Query: 182 QRFKGQYLMPNIGYGSNKMTRHML 253
++FKG LMPNIGYGS+K TRH L
Sbjct: 112 RKFKGCTLMPNIGYGSDKKTRHYL 135
Score = 30.7 bits (66), Expect = 0.25
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = +1
Query: 247 YAPNGFRKVLVHNVKELE 300
Y PN F+K +VHNV ELE
Sbjct: 134 YLPNKFKKFVVHNVSELE 151
Score = 29.9 bits (64), Expect = 0.44
Identities = 17/31 (54%), Positives = 20/31 (64%)
Frame = +3
Query: 48 MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLK 140
MA+ P+ IVKKR K+F R SDRY LK
Sbjct: 1 MAV-PLLTKKIVKKRVKQFKRPHSDRYLCLK 30
Score = 27.9 bits (59), Expect = 1.8
Identities = 9/13 (69%), Positives = 13/13 (100%)
Frame = +3
Query: 144 NWRKPRGIDNRVR 182
+WR+P+GID+RVR
Sbjct: 99 SWRRPKGIDSRVR 111
>08_01_0033 + 244930-245105,245297-245344,245835-246539,246652-246796,
246893-247240,247882-248721,248786-248832,249470-249596,
249672-249836,249973-251370,251453-251713,251802-252161
Length = 1539
Score = 29.1 bits (62), Expect = 0.77
Identities = 20/65 (30%), Positives = 29/65 (44%)
Frame = +1
Query: 79 SSKRGRRDLSGINRIAMTNLRGIGVNLEVLTTESAAIQGSILDAQHRLRFQQDDPSYAPN 258
SS GR D + + EV + E + +QG + H + Q+ PS APN
Sbjct: 997 SSTGGRNDEDSYTAPCQLEVDSMAQTKEVPSFEISEVQGDGI-VVHPISLDQE-PSNAPN 1054
Query: 259 GFRKV 273
FRK+
Sbjct: 1055 HFRKI 1059
>12_02_0388 -
18486957-18487016,18487286-18489418,18489985-18490484,
18490728-18490899
Length = 954
Score = 26.2 bits (55), Expect = 5.4
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = +3
Query: 108 RHQSDRYDKLKRNWRKPRGIDN 173
R + D +++K W K RG+D+
Sbjct: 933 RFEDDELEEIKARWNKDRGLDS 954
>07_01_0565 + 4188387-4190570
Length = 727
Score = 26.2 bits (55), Expect = 5.4
Identities = 10/24 (41%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
Frame = -3
Query: 83 DDCRPVNRSYSHLV-CFFKKRDSE 15
DDC+P + +YSH++ CF + + E
Sbjct: 539 DDCKPDSCTYSHMIPCFVDEGNIE 562
>03_02_0738 - 10824121-10825572
Length = 483
Score = 25.8 bits (54), Expect = 7.2
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +3
Query: 120 DRYDKLKRNWRKPRGIDNR 176
DRY++++R WR P D+R
Sbjct: 369 DRYEEMRRQWRHPGLGDDR 387
>03_02_0155 -
5974118-5974173,5974242-5974314,5974393-5974500,
5975189-5976914,5977065-5977620,5978008-5978485
Length = 998
Score = 25.8 bits (54), Expect = 7.2
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = -1
Query: 238 HLVGTVTDVGHQVLT 194
H +GT D+GHQ+LT
Sbjct: 253 HSIGTNPDIGHQLLT 267
>02_04_0203 -
20888010-20888162,20888242-20888469,20888969-20889073,
20889148-20889225,20889308-20889382,20890037-20890123,
20890216-20890283,20890396-20890483,20890583-20890683,
20890793-20890913,20891008-20891169,20891271-20891441
Length = 478
Score = 25.4 bits (53), Expect = 9.5
Identities = 14/46 (30%), Positives = 19/46 (41%)
Frame = +3
Query: 54 IRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRSDS 191
IR + + T R H S YDK W + G D +R D+
Sbjct: 98 IREILKTTYCHPIMVRLGWHDSGTYDKNIEEWPQRGGADGSLRFDA 143
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,767,318
Number of Sequences: 37544
Number of extensions: 133095
Number of successful extensions: 398
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 381
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 398
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 388087168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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