Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30549X
         (313 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10137| Best HMM Match : No HMM Matches (HMM E-Value=.)              70   4e-13
SB_35866| Best HMM Match : TPR_MLP1_2 (HMM E-Value=0.34)               30   0.33 
SB_26867| Best HMM Match : Acyltransferase (HMM E-Value=4.4)           27   4.1  
SB_28047| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.2  
SB_2724| Best HMM Match : No HMM Matches (HMM E-Value=.)               25   9.5  

>SB_10137| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 133

 Score = 69.7 bits (163), Expect = 4e-13
 Identities = 29/43 (67%), Positives = 36/43 (83%)
 Frame = +3

Query: 54  IRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVR 182
           + PV RP I+KKR K+FIRHQSDRY ++  +WRKP+GIDNRVR
Sbjct: 2   VMPVNRPRILKKRQKKFIRHQSDRYMRVGESWRKPKGIDNRVR 44



 Score = 47.2 bits (107), Expect = 3e-06
 Identities = 19/24 (79%), Positives = 22/24 (91%)
 Frame = +2

Query: 182 QRFKGQYLMPNIGYGSNKMTRHML 253
           +RFKGQYLMPNIGYGSNK TR ++
Sbjct: 45  RRFKGQYLMPNIGYGSNKKTRFLM 68



 Score = 31.5 bits (68), Expect = 0.14
 Identities = 12/16 (75%), Positives = 15/16 (93%)
 Frame = +1

Query: 253 PNGFRKVLVHNVKELE 300
           P+GF+K +VHNVKELE
Sbjct: 69  PDGFKKFVVHNVKELE 84


>SB_35866| Best HMM Match : TPR_MLP1_2 (HMM E-Value=0.34)
          Length = 758

 Score = 30.3 bits (65), Expect = 0.33
 Identities = 12/48 (25%), Positives = 27/48 (56%)
 Frame = +1

Query: 157 LEVLTTESAAIQGSILDAQHRLRFQQDDPSYAPNGFRKVLVHNVKELE 300
           +E L  E+  ++G++   +  +++Q++     P G RK +   ++ELE
Sbjct: 586 IEALRHENKVLKGTLEITEGEVKYQREHTGRTPKGKRKEIWREIRELE 633


>SB_26867| Best HMM Match : Acyltransferase (HMM E-Value=4.4)
          Length = 655

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -1

Query: 286 HCELGPYGIHLEHMTGHLVGTVTDVGHQVLTLE 188
           H E  P  IH+ H   H  GT++D    VLTL+
Sbjct: 554 HIEKEPSQIHI-HTYSHSTGTLSDPHPHVLTLK 585


>SB_28047| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 962

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
 Frame = -1

Query: 286 HCELGPYGI---HLEHMTGHLVGTVTDVGHQVLTLE 188
           HC  GP+GI    ++H   HL   +T + +  ++ E
Sbjct: 575 HCSCGPHGIPVKFIKHAADHLASPLTHILNTCISQE 610


>SB_2724| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 44

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -1

Query: 241 GHLVGTVTDVGHQVL 197
           GH++ T TD GHQ+L
Sbjct: 16  GHILKTATDSGHQLL 30


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,139,061
Number of Sequences: 59808
Number of extensions: 152660
Number of successful extensions: 431
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 417
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 431
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 387973711
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)