Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30549X
         (313 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68338-1|CAA92757.1|  134|Caenorhabditis elegans Hypothetical pr...    54   2e-08
Z75712-8|CAB00047.1|  319|Caenorhabditis elegans Hypothetical pr...    27   3.6  
Z71264-2|CAA95830.1| 1202|Caenorhabditis elegans Hypothetical pr...    27   3.6  
AC025727-10|AAK66029.1|  707|Caenorhabditis elegans Hypothetical...    26   4.8  

>Z68338-1|CAA92757.1|  134|Caenorhabditis elegans Hypothetical
           protein T24B8.1 protein.
          Length = 134

 Score = 54.0 bits (124), Expect = 2e-08
 Identities = 21/35 (60%), Positives = 29/35 (82%)
 Frame = +3

Query: 78  IVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVR 182
           +VKK+  +F RH+SDRY ++  +WRKP+GIDNRVR
Sbjct: 11  VVKKKLTKFKRHESDRYRRVAPSWRKPKGIDNRVR 45



 Score = 31.1 bits (67), Expect = 0.17
 Identities = 12/24 (50%), Positives = 18/24 (75%)
 Frame = +2

Query: 182 QRFKGQYLMPNIGYGSNKMTRHML 253
           +RF+G   MP IG+GS++ TR +L
Sbjct: 46  RRFRGMRAMPTIGHGSDRRTRFVL 69



 Score = 29.9 bits (64), Expect = 0.39
 Identities = 11/16 (68%), Positives = 15/16 (93%)
 Frame = +1

Query: 253 PNGFRKVLVHNVKELE 300
           PNG++KVLV NVK+L+
Sbjct: 70  PNGYKKVLVQNVKDLD 85


>Z75712-8|CAB00047.1|  319|Caenorhabditis elegans Hypothetical
           protein K04G2.10 protein.
          Length = 319

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +2

Query: 44  QDGYKTCLQADNRQKEDEEIYQASIGSL*QT*EEL 148
           QD  K   + D+RQKE  E Y+  IGS+ +  E++
Sbjct: 238 QDMVKYMEENDDRQKESIEKYKRKIGSMKKVIEKM 272


>Z71264-2|CAA95830.1| 1202|Caenorhabditis elegans Hypothetical protein
            K07G5.3 protein.
          Length = 1202

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 14/55 (25%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
 Frame = -3

Query: 164  TSRFTPIPLKFVIAIRLMPDKSLRPLFDDCRPVNRSYSHLVCFFKKRD--SEPRG 6
            T R++ +P  +++ +R+  ++ ++  FD+ R       HLV   + R+    PRG
Sbjct: 1068 TVRYSKLPEDWIVELRISLEREIKIRFDESRKHAIPQWHLVAARQLREILENPRG 1122


>AC025727-10|AAK66029.1|  707|Caenorhabditis elegans Hypothetical
           protein Y73E7A.8 protein.
          Length = 707

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +1

Query: 199 ILDAQHRLRFQQDDPSYAPNGFRKVLVHNVKELENP 306
           I DA  +L    D P ++  GF + +  +++EL +P
Sbjct: 320 ISDALQKLSASMDGPEFSNKGFTEDIFGSIEELMSP 355


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,659,124
Number of Sequences: 27780
Number of extensions: 114940
Number of successful extensions: 367
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 357
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 367
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 344570176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)