Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30549X
         (313 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49 ...    96   8e-23
AY352277-2|AAQ67419.1|   88|Apis mellifera EX4.8-5.8 protein.          22   1.5  

>AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49
           protein.
          Length = 134

 Score = 96.3 bits (229), Expect = 8e-23
 Identities = 42/45 (93%), Positives = 44/45 (97%)
 Frame = +3

Query: 48  MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVR 182
           MAIRPVYRPTIVKKRTK+FIRHQSDRY KLKRNWRKP+GIDNRVR
Sbjct: 1   MAIRPVYRPTIVKKRTKKFIRHQSDRYSKLKRNWRKPKGIDNRVR 45



 Score = 52.8 bits (121), Expect = 9e-10
 Identities = 22/24 (91%), Positives = 23/24 (95%)
 Frame = +2

Query: 182 QRFKGQYLMPNIGYGSNKMTRHML 253
           +RFKGQYLMPNIGYGSNK TRHML
Sbjct: 46  RRFKGQYLMPNIGYGSNKKTRHML 69



 Score = 35.5 bits (78), Expect = 2e-04
 Identities = 15/16 (93%), Positives = 15/16 (93%)
 Frame = +1

Query: 253 PNGFRKVLVHNVKELE 300
           P GFRKVLVHNVKELE
Sbjct: 70  PTGFRKVLVHNVKELE 85


>AY352277-2|AAQ67419.1|   88|Apis mellifera EX4.8-5.8 protein.
          Length = 88

 Score = 22.2 bits (45), Expect = 1.5
 Identities = 8/31 (25%), Positives = 17/31 (54%)
 Frame = +1

Query: 196 SILDAQHRLRFQQDDPSYAPNGFRKVLVHNV 288
           ++ + +  + F  DDP +AP+     + HN+
Sbjct: 8   NMTEFEENVSFDIDDPDFAPSK-NTTITHNI 37


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 80,180
Number of Sequences: 438
Number of extensions: 1399
Number of successful extensions: 9
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6595479
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)