Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30549X
(313 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g46430.2 68418.m05716 60S ribosomal protein L32 (RPL32B) 53 5e-08
At5g46430.1 68418.m05715 60S ribosomal protein L32 (RPL32B) 53 5e-08
At4g18100.1 68417.m02692 60S ribosomal protein L32 (RPL32A) ribo... 53 5e-08
At4g18060.1 68417.m02687 SH3 domain-containing protein 3 (SH3P3)... 27 2.0
At4g07670.1 68417.m01203 protease-associated (PA) domain-contain... 27 2.0
At4g02020.1 68417.m00272 zeste-like protein 1 (EZA1) identical t... 27 3.5
At5g60900.1 68418.m07640 lectin protein kinase family protein co... 26 4.6
At1g77980.1 68414.m09087 MADS-box family protein MADS-box protei... 26 4.6
At5g07900.1 68418.m00912 mitochondrial transcription termination... 26 6.1
At3g58240.1 68416.m06493 meprin and TRAF homology domain-contain... 26 6.1
At2g37370.1 68415.m04583 hypothetical protein 26 6.1
At1g71220.1 68414.m08219 UDP-glucose:glycoprotein glucosyltransf... 26 6.1
At5g42400.1 68418.m05162 SET domain-containing protein (TXR7) co... 25 8.1
At4g23590.1 68417.m03398 aminotransferase class I and II family ... 25 8.1
>At5g46430.2 68418.m05716 60S ribosomal protein L32 (RPL32B)
Length = 133
Score = 52.8 bits (121), Expect = 5e-08
Identities = 24/45 (53%), Positives = 34/45 (75%)
Frame = +3
Query: 48 MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVR 182
MA+ P+ +VKKR+ +FIR QSDR +K +WR+P+GID+RVR
Sbjct: 1 MAV-PLLTKKVVKKRSAKFIRPQSDRRITVKESWRRPKGIDSRVR 44
Score = 40.3 bits (90), Expect = 3e-04
Identities = 16/24 (66%), Positives = 20/24 (83%)
Frame = +2
Query: 182 QRFKGQYLMPNIGYGSNKMTRHML 253
++FKG LMPN+GYGS+K TRH L
Sbjct: 45 RKFKGVTLMPNVGYGSDKKTRHYL 68
Score = 32.7 bits (71), Expect = 0.053
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = +1
Query: 247 YAPNGFRKVLVHNVKELE 300
Y PNGF+K +VHN ELE
Sbjct: 67 YLPNGFKKFIVHNTSELE 84
>At5g46430.1 68418.m05715 60S ribosomal protein L32 (RPL32B)
Length = 133
Score = 52.8 bits (121), Expect = 5e-08
Identities = 24/45 (53%), Positives = 34/45 (75%)
Frame = +3
Query: 48 MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVR 182
MA+ P+ +VKKR+ +FIR QSDR +K +WR+P+GID+RVR
Sbjct: 1 MAV-PLLTKKVVKKRSAKFIRPQSDRRITVKESWRRPKGIDSRVR 44
Score = 40.3 bits (90), Expect = 3e-04
Identities = 16/24 (66%), Positives = 20/24 (83%)
Frame = +2
Query: 182 QRFKGQYLMPNIGYGSNKMTRHML 253
++FKG LMPN+GYGS+K TRH L
Sbjct: 45 RKFKGVTLMPNVGYGSDKKTRHYL 68
Score = 32.7 bits (71), Expect = 0.053
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = +1
Query: 247 YAPNGFRKVLVHNVKELE 300
Y PNGF+K +VHN ELE
Sbjct: 67 YLPNGFKKFIVHNTSELE 84
>At4g18100.1 68417.m02692 60S ribosomal protein L32 (RPL32A)
ribosomal protein L32, human, PIR1:R5HU32
Length = 133
Score = 52.8 bits (121), Expect = 5e-08
Identities = 24/45 (53%), Positives = 34/45 (75%)
Frame = +3
Query: 48 MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVR 182
MA+ P+ +VKKR+ +FIR QSDR +K +WR+P+GID+RVR
Sbjct: 1 MAV-PLLTKKVVKKRSAKFIRPQSDRRITVKESWRRPKGIDSRVR 44
Score = 40.3 bits (90), Expect = 3e-04
Identities = 16/24 (66%), Positives = 20/24 (83%)
Frame = +2
Query: 182 QRFKGQYLMPNIGYGSNKMTRHML 253
++FKG LMPN+GYGS+K TRH L
Sbjct: 45 RKFKGVTLMPNVGYGSDKKTRHYL 68
Score = 32.3 bits (70), Expect = 0.070
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = +1
Query: 247 YAPNGFRKVLVHNVKELE 300
Y PNGF+K +VHN ELE
Sbjct: 67 YLPNGFKKFVVHNTSELE 84
>At4g18060.1 68417.m02687 SH3 domain-containing protein 3 (SH3P3)
nearly identical to SH3 domain-containing protein 3
[Arabidopsis thaliana] GI:16974680; contains Pfam
profile PF00018: SH3 domain
Length = 351
Score = 27.5 bits (58), Expect = 2.0
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +1
Query: 118 RIAMTNLRGIGVNLEVLTTESAAIQGSILDAQHRLRFQQ 234
++A ++ + N+ VL E+ A ++ QHRL FQ+
Sbjct: 194 QLAEAKMQELKANMAVLGKEATAALAAVESQQHRLTFQR 232
>At4g07670.1 68417.m01203 protease-associated (PA) domain-containing
protein similar to PF02225: PA domain; similar to
N-acetylated-alpha-linked acidic dipeptidase II
(NAALADase II) (SP:Q9Y3Q) {Homo sapiens};similar to
Glutamate carboxypeptidase II (Membrane glutamate
carboxypeptidase) (mGCP) (N-acetylated-alpha-linked
acidic dipeptidase I) (NAALADase I)
(Pteroylpoly-gamma-glutamate
carboxypeptidase)(Folylpoly-gamma-glutamate
carboxypeptidase) (FGCP) (Folate hydrolase 1)
(Prostate-specific membrane antigen homolog) (SP|O77564)
{Sus scrofa}
Length = 280
Score = 27.5 bits (58), Expect = 2.0
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = +3
Query: 51 AIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPR 161
A+ P ++ + +K +++H + R DKL++ KPR
Sbjct: 194 AVDPNSGTAVLMEASKSYLQHIAQRLDKLQKRGWKPR 230
>At4g02020.1 68417.m00272 zeste-like protein 1 (EZA1) identical to
enhancer of zeste-like protein 1(EZA1) (GI:4185507)
[Arabidopsis thaliana]; similar to polycomb group
[Arabidopsis thaliana] GI:1903019 (curly leaf); contains
Pfam profile PF00856: SET domain
Length = 856
Score = 26.6 bits (56), Expect = 3.5
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +2
Query: 35 RNIQDGYKTCLQADNRQKEDE 97
RN+ G KTCL N +E+E
Sbjct: 517 RNLLSGLKTCLDVSNYMRENE 537
>At5g60900.1 68418.m07640 lectin protein kinase family protein
contains Pfam domains, PF01453: Lectin (probable mannose
binding) and PF00069: Protein kinase domain
Length = 748
Score = 26.2 bits (55), Expect = 4.6
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = -3
Query: 260 PFGAYDGSSCWNRNRCWASSIDP*IAADSVVNTSR 156
PFG Y+ + ++ RC AS + + A + T+R
Sbjct: 353 PFGDYESYANYDEERCKASCLSDCLCAAVIFGTNR 387
>At1g77980.1 68414.m09087 MADS-box family protein MADS-box protein
AGL66
Length = 332
Score = 26.2 bits (55), Expect = 4.6
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Frame = +1
Query: 64 FTGRQSSKRGRRDLSGINRIAM--TNLRGIGVNLEVLTTESAAIQGSILDAQHRLRFQQD 237
F ++ R + L N IA+ TN I ++E L E +Q +L A+ LR +
Sbjct: 93 FQSKEYLLRTLQQLKAENDIALQLTNPTAINSDVEELEHEVYKLQQQLLMAEEELRKYEP 152
Query: 238 DP 243
DP
Sbjct: 153 DP 154
>At5g07900.1 68418.m00912 mitochondrial transcription termination
factor family protein / mTERF family protein low
similarity to SP|Q99551 Transcription termination
factor, mitochondrial precursor (mTERF) {Homo sapiens};
contains Pfam profile PF02536: mTERF
Length = 405
Score = 25.8 bits (54), Expect = 6.1
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Frame = -3
Query: 155 FTPIPLKFVIAIRLMPDKSLRPLFDDCRPVNR----SYSHLVCFFKK 27
F P FV+AI + K + ++D C V + S ++C FKK
Sbjct: 256 FNPQKSTFVLAIHALSGKGNKSIWDKCFEVYQRWGWSEDDIMCAFKK 302
>At3g58240.1 68416.m06493 meprin and TRAF homology domain-containing
protein / MATH domain-containing protein similar to
ubiquitin-specific protease 12 [Arabidopsis thaliana]
GI:11993471; contains Pfam profile PF00917: MATH domain
Length = 317
Score = 25.8 bits (54), Expect = 6.1
Identities = 12/43 (27%), Positives = 22/43 (51%)
Frame = -3
Query: 149 PIPLKFVIAIRLMPDKSLRPLFDDCRPVNRSYSHLVCFFKKRD 21
P+ KF I+ S +P++ D + + H++ + KKRD
Sbjct: 4 PVDNKFTWVIKNFCSVSPKPIYSDQFLIGGNKWHILAYSKKRD 46
>At2g37370.1 68415.m04583 hypothetical protein
Length = 697
Score = 25.8 bits (54), Expect = 6.1
Identities = 14/61 (22%), Positives = 28/61 (45%)
Frame = +1
Query: 100 DLSGINRIAMTNLRGIGVNLEVLTTESAAIQGSILDAQHRLRFQQDDPSYAPNGFRKVLV 279
++ + + L+ + + E L E + SI A+ RLR Q++ N ++L+
Sbjct: 344 EVGQLEKDVAAELKKLEILKEDLEAELKRVNTSITSARARLRNAQEEREQFDNASNEILM 403
Query: 280 H 282
H
Sbjct: 404 H 404
>At1g71220.1 68414.m08219 UDP-glucose:glycoprotein
glucosyltransferase, putative similar to
UDP-glucose:glycoprotein glucosyltransferase precursor
GB:Q09332 [SP|Q09332] from Drosophila melanogaster,
[gi:7670746] and [gi:11346464] from Homo sapiens
Length = 1673
Score = 25.8 bits (54), Expect = 6.1
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +1
Query: 91 GRRDLSGINRIAMTNLRGIGVNLEVL 168
G +D S + RI + +LRG V+LEV+
Sbjct: 1253 GSQDQSSLKRITIDDLRGKVVHLEVV 1278
>At5g42400.1 68418.m05162 SET domain-containing protein (TXR7)
contains Pfam profile PF00856: SET domain
Length = 1423
Score = 25.4 bits (53), Expect = 8.1
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = -3
Query: 239 SSCWNRNRCWASSID 195
SSCW +N+ W S D
Sbjct: 475 SSCWRKNKIWFRSSD 489
>At4g23590.1 68417.m03398 aminotransferase class I and II family
protein similar to nicotianamine aminotransferase from
Hordeum vulgare [GI:6498122, GI:6469087]; contains Pfam
profile PF00155 aminotransferase, classes I and II
Length = 424
Score = 25.4 bits (53), Expect = 8.1
Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = +2
Query: 203 LMPNIGYGSNKMTRHMLQMDSVR--S*FTMLKSW 298
++P I +G N RH + M++ R F LKS+
Sbjct: 371 VLPGIAFGQNNWLRHSIDMETPRLEDAFERLKSF 404
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,403,877
Number of Sequences: 28952
Number of extensions: 111118
Number of successful extensions: 353
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 340
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 353
length of database: 12,070,560
effective HSP length: 70
effective length of database: 10,043,920
effective search space used: 331449360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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