Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30547
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC664.04c |rps1602|rps16-2, rps16|40S ribosomal protein S16|Sc...   179   2e-46
SPBC18H10.14 |rps1601|rps16-1|40S ribosomal protein S16|Schizosa...   179   2e-46
SPAC29A4.03c |||mitochondrial ribosomal protein subunit S9|Schiz...    50   3e-07
SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5 |Sc...    27   1.7  
SPAC19G12.02c |pms1||MutL family mismatch-repair protein Pms1|Sc...    26   3.8  
SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces pomb...    25   5.1  
SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizo...    25   6.7  
SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces pomb...    25   6.7  
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces...    25   6.7  
SPAC13G7.04c |mac1||membrane anchored protein Mac1 |Schizosaccha...    25   8.9  

>SPAC664.04c |rps1602|rps16-2, rps16|40S ribosomal protein
           S16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 140

 Score =  179 bits (436), Expect = 2e-46
 Identities = 83/134 (61%), Positives = 106/134 (79%)
 Frame = +2

Query: 2   FGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVDIRVTV 181
           FG+K  ATAVA+CK G G+++VNG PL LV+P +L+ K+ EPIL+ G +KF+ VDIRV V
Sbjct: 7   FGKKGNATAVAHCKVGKGLIKVNGAPLSLVQPEILRMKVYEPILVAGADKFAGVDIRVRV 66

Query: 182 KGGGHVAQVYAIRQAISKALIAFYRNM*TKPQRRKSKDILVQYDRSLLVADPRRCEPKKF 361
            GGGHV+Q+YAIRQAISKA++A+Y+    +  + + K  L+ YDR+LLVADPRR EPKKF
Sbjct: 67  SGGGHVSQIYAIRQAISKAIVAYYQKFVDEHSKAELKKALITYDRTLLVADPRRMEPKKF 126

Query: 362 GGPGARARYQKSYR 403
           GG GARAR QKSYR
Sbjct: 127 GGHGARARQQKSYR 140


>SPBC18H10.14 |rps1601|rps16-1|40S ribosomal protein
           S16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 140

 Score =  179 bits (436), Expect = 2e-46
 Identities = 83/134 (61%), Positives = 106/134 (79%)
 Frame = +2

Query: 2   FGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVDIRVTV 181
           FG+K  ATAVA+CK G G+++VNG PL LV+P +L+ K+ EPIL+ G +KF+ VDIRV V
Sbjct: 7   FGKKGNATAVAHCKVGKGLIKVNGAPLSLVQPEILRMKVYEPILVAGADKFAGVDIRVRV 66

Query: 182 KGGGHVAQVYAIRQAISKALIAFYRNM*TKPQRRKSKDILVQYDRSLLVADPRRCEPKKF 361
            GGGHV+Q+YAIRQAISKA++A+Y+    +  + + K  L+ YDR+LLVADPRR EPKKF
Sbjct: 67  SGGGHVSQIYAIRQAISKAIVAYYQKFVDEHSKAELKKALITYDRTLLVADPRRMEPKKF 126

Query: 362 GGPGARARYQKSYR 403
           GG GARAR QKSYR
Sbjct: 127 GGHGARARQQKSYR 140


>SPAC29A4.03c |||mitochondrial ribosomal protein subunit
           S9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 132

 Score = 49.6 bits (113), Expect = 3e-07
 Identities = 39/128 (30%), Positives = 58/128 (45%)
 Frame = +2

Query: 5   GRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVDIRVTVK 184
           G++K++ A      G G   VNG P D+   R++  K      L    + +  ++  TV 
Sbjct: 12  GKRKSSKATVKMLPGTGKFYVNGSPFDVYFQRMVHRK-HAVYPLAACNRLTNYNVWATVH 70

Query: 185 GGGHVAQVYAIRQAISKALIAFYRNM*TKPQRRKSKDILVQYDRSLLVADPRRCEPKKFG 364
           GGG   Q  A+  AISK+LI          Q    K ++   D   ++ D R+ E KK G
Sbjct: 71  GGGPTGQSGAVHAAISKSLIL---------QEPSLKQVI--KDTHCVLNDKRKVERKKTG 119

Query: 365 GPGARARY 388
            P AR +Y
Sbjct: 120 QPKARKKY 127


>SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 632

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +3

Query: 384 DTRNLTVKPSTKPSGGIVAAVCCH 455
           D  N+ VKP+  P+  +   +CCH
Sbjct: 566 DRFNVIVKPALNPAERMTVRICCH 589


>SPAC19G12.02c |pms1||MutL family mismatch-repair protein
           Pms1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 794

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 18/76 (23%), Positives = 37/76 (48%)
 Frame = -3

Query: 337 RVSHQQTPIVLN*DVFGFPSLRLRLHISVEGDQSLRNSLSDSVNLCYMTTTLDCHSDVDH 158
           R S+++  + +N  +   P +  R+   V    S+  S   ++NL     T+D +   D 
Sbjct: 250 RASNERQMLFINRRLVNLPKIA-RVIQEVFKPYSMAQSPFFAINLRITNGTIDINVSPDK 308

Query: 157 REFFLAEQKDRFLKFV 110
           +  FL+E+ D  ++F+
Sbjct: 309 KSVFLSEE-DSIIEFI 323


>SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 933

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 10/41 (24%), Positives = 24/41 (58%)
 Frame = +2

Query: 137 LGKEKFSMVDIRVTVKGGGHVAQVYAIRQAISKALIAFYRN 259
           L  +  S++D+ ++    GH+  V ++ + I+ + + FY+N
Sbjct: 338 LENQFLSLIDLHLS--DAGHITTVNSVEKVIAYSKLRFYKN 376


>SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase
           Ubp12|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 979

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 11/31 (35%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -3

Query: 223 LSDSVNLCYMTTTLDCHSDV-DHREFFLAEQ 134
           LS+  N CYM + L C +   + R+FF +++
Sbjct: 313 LSNLGNTCYMNSALQCLTHTRELRDFFTSDE 343


>SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 782

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -3

Query: 277 LRLRLHISVEGDQSLRNSLSDSVNLCYMTTTLDC 176
           LRL + IS  G+Q L+++  D  N CY+     C
Sbjct: 669 LRLAMEISARGNQYLQDNRID--NKCYLYERQKC 700


>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1154

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -2

Query: 71   RLHAAFHDHACNTQLRWRFS 12
            RLH+ F++H C + L+  FS
Sbjct: 1062 RLHSLFNEHFCKSNLQLFFS 1081


>SPAC13G7.04c |mac1||membrane anchored protein Mac1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 756

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -2

Query: 110 TAAVWAQPSPMDARLHAAFHDHACNTQLR 24
           T +V  +  P  AR  AA H +A +TQLR
Sbjct: 375 TPSVKPEMFPKTARPFAAIHANASSTQLR 403


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,048,980
Number of Sequences: 5004
Number of extensions: 38488
Number of successful extensions: 109
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)