Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30547
(516 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0152 - 1168928-1169377 184 4e-47
11_01_0155 - 1287003-1287452 184 4e-47
07_03_1553 - 27653473-27653490,27653634-27653673,27653852-276539... 38 0.004
03_06_0097 - 31632238-31632525,31633386-31633769 38 0.005
07_03_0227 - 15398371-15398925 29 1.7
07_03_1483 + 26881032-26882035,26882130-26882204,26882324-268828... 29 2.2
11_01_0523 - 4109070-4109984,4110532-4110936 28 5.1
04_04_1154 - 31297628-31298020,31298150-31298300,31298389-312986... 28 5.1
02_05_0156 + 26341904-26342801,26343469-26344148 27 6.8
11_03_0039 - 9145639-9146378,9149199-9149538 27 8.9
10_08_0438 + 17919355-17919391,17919491-17919544,17919928-179201... 27 8.9
07_03_1034 - 23423997-23424265,23424390-23424564 27 8.9
05_04_0061 + 17582368-17582606,17582716-17583090,17593677-17594265 27 8.9
03_02_0665 - 10268959-10269148,10269344-10269936,10270572-102710... 27 8.9
>12_01_0152 - 1168928-1169377
Length = 149
Score = 184 bits (448), Expect = 4e-47
Identities = 80/134 (59%), Positives = 108/134 (80%)
Frame = +2
Query: 2 FGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVDIRVTV 181
FGRKKTA AV+YCK G G+++VNG P++L+ P +L+ K EPILL G+ +F +D+R+ V
Sbjct: 16 FGRKKTAVAVSYCKPGRGLIKVNGVPIELIRPEMLRLKAFEPILLAGRSRFKDIDMRIRV 75
Query: 182 KGGGHVAQVYAIRQAISKALIAFYRNM*TKPQRRKSKDILVQYDRSLLVADPRRCEPKKF 361
+GGG +Q+YAIRQAI+KAL+A+Y+ + +++ KDI +YDR+LLVADPRRCEPKKF
Sbjct: 76 RGGGKTSQIYAIRQAIAKALVAYYQKYVDEASKKEVKDIFARYDRTLLVADPRRCEPKKF 135
Query: 362 GGPGARARYQKSYR 403
GG GARAR+QKSYR
Sbjct: 136 GGRGARARFQKSYR 149
>11_01_0155 - 1287003-1287452
Length = 149
Score = 184 bits (448), Expect = 4e-47
Identities = 80/134 (59%), Positives = 108/134 (80%)
Frame = +2
Query: 2 FGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVDIRVTV 181
FGRKKTA AV+YCK G G+++VNG P++L+ P +L+ K EPILL G+ +F +D+R+ V
Sbjct: 16 FGRKKTAVAVSYCKPGRGLIKVNGVPIELIRPEMLRLKAFEPILLAGRSRFKDIDMRIRV 75
Query: 182 KGGGHVAQVYAIRQAISKALIAFYRNM*TKPQRRKSKDILVQYDRSLLVADPRRCEPKKF 361
+GGG +Q+YAIRQAI+KAL+A+Y+ + +++ KDI +YDR+LLVADPRRCEPKKF
Sbjct: 76 RGGGKTSQIYAIRQAIAKALVAYYQKYVDEASKKEVKDIFARYDRTLLVADPRRCEPKKF 135
Query: 362 GGPGARARYQKSYR 403
GG GARAR+QKSYR
Sbjct: 136 GGRGARARFQKSYR 149
>07_03_1553 -
27653473-27653490,27653634-27653673,27653852-27653939,
27654150-27654230,27654644-27655084,27655692-27656325
Length = 433
Score = 38.3 bits (85), Expect = 0.004
Identities = 26/79 (32%), Positives = 38/79 (48%)
Frame = +2
Query: 5 GRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVDIRVTVK 184
G++K + A + + G G VN + D P +L ++ + D+ TVK
Sbjct: 295 GKRKCSIARVWIQPGDGKFIVNDKQFDSYFP-ILDHRADLLRPFTVTKTLGRWDVTCTVK 353
Query: 185 GGGHVAQVYAIRQAISKAL 241
GGG QV AIR IS+AL
Sbjct: 354 GGGVSGQVGAIRLGISRAL 372
>03_06_0097 - 31632238-31632525,31633386-31633769
Length = 223
Score = 37.9 bits (84), Expect = 0.005
Identities = 41/136 (30%), Positives = 60/136 (44%), Gaps = 3/136 (2%)
Frame = +2
Query: 5 GRKKTATAVAYCKRGHGMLRVNGRPLDLV---EPRLLQYKLQEPILLLGKEKFSMVDIRV 175
GR+KTA A + G G + +N R P ++Y + P++ LG E + D+ V
Sbjct: 102 GRRKTAIARVVLQEGTGRVFINFRDAKEYLQGNPMWMEY-CKVPLVTLGFE--NSYDVFV 158
Query: 176 TVKGGGHVAQVYAIRQAISKALIAFYRNM*TKPQRRKSKDILVQYDRSLLVADPRRCEPK 355
V GGG Q AI +++AL+ + + + + LL D R E K
Sbjct: 159 KVHGGGLSGQAQAICLGVARALV-----------KISTANKVTLRGEGLLTRDTRIVERK 207
Query: 356 KFGGPGARARYQKSYR 403
K G AR R Q S R
Sbjct: 208 KAGLKKARKRPQFSKR 223
>07_03_0227 - 15398371-15398925
Length = 184
Score = 29.5 bits (63), Expect = 1.7
Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Frame = -2
Query: 125 VPEVCTAAVWAQPSPMDARLHAAFH--DHACNTQLRWRF 15
+P +C A W P+ A H FH C+ + RW +
Sbjct: 23 LPPLCRAPWWPSPASSAAATHLRFHPRHRRCHPRRRWSY 61
>07_03_1483 +
26881032-26882035,26882130-26882204,26882324-26882861,
26883999-26884895,26885178-26885327,26885459-26885791,
26886501-26886695,26887805-26887918
Length = 1101
Score = 29.1 bits (62), Expect = 2.2
Identities = 11/34 (32%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +3
Query: 99 DCCST-NFRNLSFCSARKNSLWSTSE*QSRVVVM 197
+CC+ + +LS C KN++W S S ++V+
Sbjct: 725 ECCNQLRYLSLSNCDVGKNAIWKISAPNSNIIVL 758
>11_01_0523 - 4109070-4109984,4110532-4110936
Length = 439
Score = 27.9 bits (59), Expect = 5.1
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = +2
Query: 185 GGGHVAQVYAIRQAISKALIAFY 253
GGG V +++A++KAL+AFY
Sbjct: 48 GGGGFFDVGRLKEALAKALVAFY 70
>04_04_1154 -
31297628-31298020,31298150-31298300,31298389-31298620,
31298700-31298910,31299137-31299255,31299341-31299415,
31299991-31300189,31300258-31300664,31300775-31300839,
31300967-31301011,31301449-31301520,31301597-31301671,
31301912-31301983,31302178-31302249,31302525-31302596,
31302880-31302951,31303056-31303127,31304064-31304135,
31304375-31304561,31304686-31304815
Length = 930
Score = 27.9 bits (59), Expect = 5.1
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +2
Query: 68 NGRPLDLVEPRLLQYKLQEPILLL 139
NG PLD V+P+L ++ +E I ++
Sbjct: 807 NGHPLDFVDPKLSEFNSEEVIRVI 830
>02_05_0156 + 26341904-26342801,26343469-26344148
Length = 525
Score = 27.5 bits (58), Expect = 6.8
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -2
Query: 422 WFR*RLNGKISGIWHGH 372
WFR R G I GIW+ H
Sbjct: 155 WFRGRRRGLIMGIWNAH 171
>11_03_0039 - 9145639-9146378,9149199-9149538
Length = 359
Score = 27.1 bits (57), Expect = 8.9
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = -2
Query: 290 WISFFEASSTYFGRRRSEPSK 228
++ FF+ SST+ G R S+P+K
Sbjct: 42 FVEFFQPSSTFDGSRPSDPAK 62
>10_08_0438 +
17919355-17919391,17919491-17919544,17919928-17920186,
17920396-17920484,17920645-17920775,17920900-17920946,
17921029-17921137,17921217-17921303,17921521-17921692,
17921837-17922309,17922402-17922463,17922537-17922639,
17923535-17923636
Length = 574
Score = 27.1 bits (57), Expect = 8.9
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = -3
Query: 262 HISVEGDQSLRNSLSDSVNLCYMTTTLDCHSDVDHREFFLAEQKD 128
HIS + + + S D+VNL T+++ HSD + E ++D
Sbjct: 369 HISDDKKEVVAISEEDAVNLVEAKTSINLHSDQEKDEIVKPMEED 413
>07_03_1034 - 23423997-23424265,23424390-23424564
Length = 147
Score = 27.1 bits (57), Expect = 8.9
Identities = 19/60 (31%), Positives = 24/60 (40%)
Frame = +2
Query: 272 PQRRKSKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKSYR*AFNETIGWYRRGGLL 451
P RRK D L+ + V P G G R + AF E + YR+ GLL
Sbjct: 26 PPRRKRNDDLLHDEEFQRVVRDIVIGPDNVPGGGHALRIIRDPATAFEELLECYRKAGLL 85
>05_04_0061 + 17582368-17582606,17582716-17583090,17593677-17594265
Length = 400
Score = 27.1 bits (57), Expect = 8.9
Identities = 10/38 (26%), Positives = 18/38 (47%)
Frame = +1
Query: 187 WWSCSTSLRYQTSYFEGSDRLLPKYVDEASKKEIQRHP 300
WW CS+S ++SY+ S ++++ R P
Sbjct: 49 WWPCSSSSTARSSYYSSSMSSSVSGTGSQNQRDFDREP 86
>03_02_0665 - 10268959-10269148,10269344-10269936,10270572-10271004,
10271172-10272040,10272121-10272915,10273612-10273829,
10274931-10275230,10276834-10277161
Length = 1241
Score = 27.1 bits (57), Expect = 8.9
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +1
Query: 193 SCSTSLRYQTSYFEGSDRLLPKYVDEASK 279
SC TSL Y T + DR+ K VD A +
Sbjct: 1114 SCGTSLLYNTMFPRHKDRVNKKLVDVAKE 1142
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,535,434
Number of Sequences: 37544
Number of extensions: 289854
Number of successful extensions: 806
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 789
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 804
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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