Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30547
(516 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_47363| Best HMM Match : No HMM Matches (HMM E-Value=.) 148 3e-36
SB_2591| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002
SB_50457| Best HMM Match : Amidase (HMM E-Value=2.6e-36) 37 0.009
SB_35353| Best HMM Match : Arm (HMM E-Value=6.6e-27) 29 1.7
SB_3614| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.0
SB_14111| Best HMM Match : WD40 (HMM E-Value=6.2e-30) 27 6.9
SB_56942| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2
SB_9053| Best HMM Match : TIG (HMM E-Value=0) 27 9.2
SB_7296| Best HMM Match : PHD (HMM E-Value=0.0013) 27 9.2
SB_10519| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2
>SB_47363| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 107
Score = 148 bits (358), Expect = 3e-36
Identities = 68/97 (70%), Positives = 84/97 (86%)
Frame = +2
Query: 113 KLQEPILLLGKEKFSMVDIRVTVKGGGHVAQVYAIRQAISKALIAFYRNM*TKPQRRKSK 292
K++EPILLLGKE+F VDIRV VKGGGH +++YAIRQAISK+L+A+Y+ + +++ +
Sbjct: 11 KVEEPILLLGKERFEGVDIRVRVKGGGHTSRIYAIRQAISKSLVAYYQKYVDEVSKKEIR 70
Query: 293 DILVQYDRSLLVADPRRCEPKKFGGPGARARYQKSYR 403
DILVQYDRSLLVADPRR E KKFGGPGAR+RYQKSYR
Sbjct: 71 DILVQYDRSLLVADPRRTEAKKFGGPGARSRYQKSYR 107
>SB_2591| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 533
Score = 39.5 bits (88), Expect = 0.002
Identities = 30/82 (36%), Positives = 38/82 (46%)
Frame = +2
Query: 5 GRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVDIRVTVK 184
G +K + A A+ +G G + VN RP RL Q K Q + D V
Sbjct: 338 GYRKRSVAKAWVMKGSGKITVNDRPFVEYFSRL-QDKQQILFPFQVVDCVGQFDASCHVL 396
Query: 185 GGGHVAQVYAIRQAISKALIAF 250
GGG Q AIR AIS+AL+ F
Sbjct: 397 GGGLTGQAGAIRLAISRALLNF 418
>SB_50457| Best HMM Match : Amidase (HMM E-Value=2.6e-36)
Length = 391
Score = 37.1 bits (82), Expect = 0.009
Identities = 31/80 (38%), Positives = 37/80 (46%)
Frame = +2
Query: 164 DIRVTVKGGGHVAQVYAIRQAISKALIAFYRNM*TKPQRRKSKDILVQYDRSLLVADPRR 343
DI+V V GGG Q AI+ I++ALI F N KP K+ + D R
Sbjct: 323 DIKVNVHGGGESGQAGAIKHGITRALIDF--NADLKPTLSKA---------GFVTRDARE 371
Query: 344 CEPKKFGGPGARARYQKSYR 403
E KK G AR R Q S R
Sbjct: 372 VERKKCGLRKARRRKQFSKR 391
>SB_35353| Best HMM Match : Arm (HMM E-Value=6.6e-27)
Length = 513
Score = 29.5 bits (63), Expect = 1.7
Identities = 14/26 (53%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
Frame = +1
Query: 190 WSCSTSLRYQTSYFE-GSDRLLPKYV 264
WSCSTS+R +TS F+ GS LL + +
Sbjct: 155 WSCSTSMRNRTSIFKAGSVPLLARLI 180
>SB_3614| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 117
Score = 28.3 bits (60), Expect = 4.0
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Frame = -3
Query: 157 REFFLAEQKDRFLKFVLQQSGLNQ--VQWTP 71
R F + KDR+LK L++ G Q QW P
Sbjct: 12 RSFLFTQDKDRYLKAGLKKYGYGQWTAQWVP 42
>SB_14111| Best HMM Match : WD40 (HMM E-Value=6.2e-30)
Length = 1093
Score = 27.5 bits (58), Expect = 6.9
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -3
Query: 121 LKFVLQQSGLNQVQWTPVYT 62
LK SG+N++ W PVYT
Sbjct: 198 LKIQAHTSGVNRLDWNPVYT 217
>SB_56942| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 151
Score = 27.1 bits (57), Expect = 9.2
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -2
Query: 380 HGHLDHRTSWARSDAGQPPANSYRIELG 297
HG L+H + WA A Q P +I+LG
Sbjct: 30 HGRLNHESVWA--SASQSPGEYIQIDLG 55
>SB_9053| Best HMM Match : TIG (HMM E-Value=0)
Length = 2990
Score = 27.1 bits (57), Expect = 9.2
Identities = 12/40 (30%), Positives = 18/40 (45%)
Frame = +2
Query: 131 LLLGKEKFSMVDIRVTVKGGGHVAQVYAIRQAISKALIAF 250
L +GKEK +M GGH+ + + + Q K F
Sbjct: 463 LWIGKEKNTMTPSSAPAMPGGHLVRSFKVEQVADKVFKTF 502
>SB_7296| Best HMM Match : PHD (HMM E-Value=0.0013)
Length = 873
Score = 27.1 bits (57), Expect = 9.2
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +3
Query: 84 TWLSPDCCSTNFRNLSFCSARKNSLWSTS 170
TW+ P C S+NF + S ++ NS+ STS
Sbjct: 716 TWICPCCGSSNFSSGSIFTSSSNSI-STS 743
>SB_10519| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 873
Score = 27.1 bits (57), Expect = 9.2
Identities = 20/70 (28%), Positives = 32/70 (45%)
Frame = +1
Query: 97 QTAAVQTSGTYPFARQGKILYGRHQSDSQGWWSCSTSLRYQTSYFEGSDRLLPKYVDEAS 276
Q + Q G Y +GK+L+ +D Q + C +T Y + DRL +++D
Sbjct: 23 QLLSEQLKG-YDARTEGKVLF---LADLQEY--CKKMSEVETEYSKNLDRLSDRFLDRLQ 76
Query: 277 KKEIQRHPSS 306
K + QR S
Sbjct: 77 KFKAQRKERS 86
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,928,010
Number of Sequences: 59808
Number of extensions: 298375
Number of successful extensions: 698
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 667
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 697
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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