Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30547
(516 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M60854-1|AAA60583.1| 146|Homo sapiens RPS16 protein. 223 3e-58
BC007977-1|AAH07977.1| 146|Homo sapiens ribosomal protein S16 p... 223 3e-58
BC004324-1|AAH04324.1| 146|Homo sapiens ribosomal protein S16 p... 223 3e-58
AB061841-1|BAB79479.1| 146|Homo sapiens ribosomal protein S16 p... 223 3e-58
BC071674-1|AAH71674.1| 152|Homo sapiens RPS16 protein protein. 125 8e-29
AK097937-1|BAC85106.1| 178|Homo sapiens protein ( Homo sapiens ... 83 4e-16
BC057240-1|AAH57240.1| 396|Homo sapiens mitochondrial ribosomal... 53 5e-07
BC047784-1|AAH47784.1| 302|Homo sapiens MRPS9 protein protein. 53 5e-07
AL122010-1|CAI23556.1| 979|Homo sapiens discs, large (Drosophil... 31 2.4
AL365410-1|CAB96954.1| 198|Homo sapiens hypothetical protein pr... 30 4.2
M62302-2|AAA58501.1| 372|Homo sapiens growth/differentiation fa... 30 5.5
AC003972-2|AAB94786.1| 372|Homo sapiens GDF-1 protein. 30 5.5
>M60854-1|AAA60583.1| 146|Homo sapiens RPS16 protein.
Length = 146
Score = 223 bits (545), Expect = 3e-58
Identities = 100/134 (74%), Positives = 122/134 (91%)
Frame = +2
Query: 2 FGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVDIRVTV 181
FGRKKTATAVA+CKRG+G+++VNGRPL+++EPR LQYKL EP+LLLGKE+F+ VDIRV V
Sbjct: 13 FGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAGVDIRVRV 72
Query: 182 KGGGHVAQVYAIRQAISKALIAFYRNM*TKPQRRKSKDILVQYDRSLLVADPRRCEPKKF 361
KGGGHVAQ+YAIRQ+ISKAL+A+Y+ + +++ KDIL+QYDR+LLVADPRRCE KKF
Sbjct: 73 KGGGHVAQIYAIRQSISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVADPRRCESKKF 132
Query: 362 GGPGARARYQKSYR 403
GGPGARARYQKSYR
Sbjct: 133 GGPGARARYQKSYR 146
>BC007977-1|AAH07977.1| 146|Homo sapiens ribosomal protein S16
protein.
Length = 146
Score = 223 bits (545), Expect = 3e-58
Identities = 100/134 (74%), Positives = 122/134 (91%)
Frame = +2
Query: 2 FGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVDIRVTV 181
FGRKKTATAVA+CKRG+G+++VNGRPL+++EPR LQYKL EP+LLLGKE+F+ VDIRV V
Sbjct: 13 FGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAGVDIRVRV 72
Query: 182 KGGGHVAQVYAIRQAISKALIAFYRNM*TKPQRRKSKDILVQYDRSLLVADPRRCEPKKF 361
KGGGHVAQ+YAIRQ+ISKAL+A+Y+ + +++ KDIL+QYDR+LLVADPRRCE KKF
Sbjct: 73 KGGGHVAQIYAIRQSISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVADPRRCESKKF 132
Query: 362 GGPGARARYQKSYR 403
GGPGARARYQKSYR
Sbjct: 133 GGPGARARYQKSYR 146
>BC004324-1|AAH04324.1| 146|Homo sapiens ribosomal protein S16
protein.
Length = 146
Score = 223 bits (545), Expect = 3e-58
Identities = 100/134 (74%), Positives = 122/134 (91%)
Frame = +2
Query: 2 FGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVDIRVTV 181
FGRKKTATAVA+CKRG+G+++VNGRPL+++EPR LQYKL EP+LLLGKE+F+ VDIRV V
Sbjct: 13 FGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAGVDIRVRV 72
Query: 182 KGGGHVAQVYAIRQAISKALIAFYRNM*TKPQRRKSKDILVQYDRSLLVADPRRCEPKKF 361
KGGGHVAQ+YAIRQ+ISKAL+A+Y+ + +++ KDIL+QYDR+LLVADPRRCE KKF
Sbjct: 73 KGGGHVAQIYAIRQSISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVADPRRCESKKF 132
Query: 362 GGPGARARYQKSYR 403
GGPGARARYQKSYR
Sbjct: 133 GGPGARARYQKSYR 146
>AB061841-1|BAB79479.1| 146|Homo sapiens ribosomal protein S16
protein.
Length = 146
Score = 223 bits (545), Expect = 3e-58
Identities = 100/134 (74%), Positives = 122/134 (91%)
Frame = +2
Query: 2 FGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVDIRVTV 181
FGRKKTATAVA+CKRG+G+++VNGRPL+++EPR LQYKL EP+LLLGKE+F+ VDIRV V
Sbjct: 13 FGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAGVDIRVRV 72
Query: 182 KGGGHVAQVYAIRQAISKALIAFYRNM*TKPQRRKSKDILVQYDRSLLVADPRRCEPKKF 361
KGGGHVAQ+YAIRQ+ISKAL+A+Y+ + +++ KDIL+QYDR+LLVADPRRCE KKF
Sbjct: 73 KGGGHVAQIYAIRQSISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVADPRRCESKKF 132
Query: 362 GGPGARARYQKSYR 403
GGPGARARYQKSYR
Sbjct: 133 GGPGARARYQKSYR 146
>BC071674-1|AAH71674.1| 152|Homo sapiens RPS16 protein protein.
Length = 152
Score = 125 bits (302), Expect = 8e-29
Identities = 55/76 (72%), Positives = 68/76 (89%)
Frame = +2
Query: 2 FGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVDIRVTV 181
FGRKKTATAVA+CKRG+G+++VNGRPL+++EPR LQYKL EP+LLLGKE+F+ VDIRV V
Sbjct: 13 FGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAGVDIRVRV 72
Query: 182 KGGGHVAQVYAIRQAI 229
KGGGHVAQ+Y Q +
Sbjct: 73 KGGGHVAQIYGESQEL 88
>AK097937-1|BAC85106.1| 178|Homo sapiens protein ( Homo sapiens
cDNA FLJ40618 fis, clone THYMU2013089, moderately
similar to 40S RIBOSOMAL PROTEIN S16. ).
Length = 178
Score = 83.4 bits (197), Expect = 4e-16
Identities = 42/84 (50%), Positives = 55/84 (65%)
Frame = +2
Query: 2 FGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVDIRVTV 181
F K+ A AV C+ G G +R+N PL+++ LQYKL E LLL KE+ + +DI V V
Sbjct: 24 FTYKEMAIAVVLCRCGSGFIRMNEGPLEMIRLLTLQYKLLELGLLLDKEQLAGMDIHVRV 83
Query: 182 KGGGHVAQVYAIRQAISKALIAFY 253
KG GHV Q+YA+ Q ISKAL+ Y
Sbjct: 84 KGSGHVVQIYAVLQYISKALVPCY 107
>BC057240-1|AAH57240.1| 396|Homo sapiens mitochondrial ribosomal
protein S9 protein.
Length = 396
Score = 53.2 bits (122), Expect = 5e-07
Identities = 44/129 (34%), Positives = 60/129 (46%), Gaps = 1/129 (0%)
Frame = +2
Query: 5 GRKKTATAVAYC-KRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVDIRVTV 181
G++KTA A A K G G ++VNG L P + Q + Q ++ D+ TV
Sbjct: 274 GKRKTAKAEAIVYKHGSGRIKVNGIDYQLYFP-ITQDREQLMFPFHFVDRLGKHDVTCTV 332
Query: 182 KGGGHVAQVYAIRQAISKALIAFYRNM*TKPQRRKSKDILVQYDRSLLVADPRRCEPKKF 361
GGG AQ AIR A++KAL +F ++ LL DPR E KK
Sbjct: 333 SGGGRSAQAGAIRLAMAKALCSFV----------TEDEVEWMRQAGLLTTDPRVRERKKP 382
Query: 362 GGPGARARY 388
G GAR ++
Sbjct: 383 GQEGARRKF 391
>BC047784-1|AAH47784.1| 302|Homo sapiens MRPS9 protein protein.
Length = 302
Score = 53.2 bits (122), Expect = 5e-07
Identities = 44/129 (34%), Positives = 60/129 (46%), Gaps = 1/129 (0%)
Frame = +2
Query: 5 GRKKTATAVAYC-KRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVDIRVTV 181
G++KTA A A K G G ++VNG L P + Q + Q ++ D+ TV
Sbjct: 180 GKRKTAKAEAIVYKHGSGRIKVNGIDYQLYFP-ITQDREQLMFPFHFVDRLGKHDVTCTV 238
Query: 182 KGGGHVAQVYAIRQAISKALIAFYRNM*TKPQRRKSKDILVQYDRSLLVADPRRCEPKKF 361
GGG AQ AIR A++KAL +F ++ LL DPR E KK
Sbjct: 239 SGGGRSAQAGAIRLAMAKALCSFV----------TEDEVEWMRQAGLLTTDPRVRERKKP 288
Query: 362 GGPGARARY 388
G GAR ++
Sbjct: 289 GQEGARRKF 297
>AL122010-1|CAI23556.1| 979|Homo sapiens discs, large (Drosophila)
homolog-associated protein 3 protein.
Length = 979
Score = 31.1 bits (67), Expect = 2.4
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +1
Query: 160 GRHQSDSQGWWSCSTSLRYQTSYFEG 237
GRHQ+ S GWWS +L + + G
Sbjct: 251 GRHQAKSTGWWSSDDNLDSDSGFLAG 276
>AL365410-1|CAB96954.1| 198|Homo sapiens hypothetical protein
protein.
Length = 198
Score = 30.3 bits (65), Expect = 4.2
Identities = 12/20 (60%), Positives = 17/20 (85%), Gaps = 1/20 (5%)
Frame = +3
Query: 108 STNF-RNLSFCSARKNSLWS 164
S+NF +N+SFC R++SLWS
Sbjct: 49 SSNFEKNMSFCQIRRDSLWS 68
>M62302-2|AAA58501.1| 372|Homo sapiens growth/differentiation
factor 1 protein.
Length = 372
Score = 29.9 bits (64), Expect = 5.5
Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Frame = +2
Query: 296 ILVQYDRSLL--VADPRR-CEPKKFGGPGARARYQKSYR*AFNETIGWYR 436
+LV D L +A PRR EP GGPG R ++ Y +F E +GW+R
Sbjct: 236 LLVTLDPRLCHPLARPRRDAEPVLGGGPGGACRARRLYV-SFRE-VGWHR 283
>AC003972-2|AAB94786.1| 372|Homo sapiens GDF-1 protein.
Length = 372
Score = 29.9 bits (64), Expect = 5.5
Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Frame = +2
Query: 296 ILVQYDRSLL--VADPRR-CEPKKFGGPGARARYQKSYR*AFNETIGWYR 436
+LV D L +A PRR EP GGPG R ++ Y +F E +GW+R
Sbjct: 236 LLVTLDPRLCHPLARPRRDAEPVLGGGPGGACRARRLYV-SFRE-VGWHR 283
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 77,010,639
Number of Sequences: 237096
Number of extensions: 1552954
Number of successful extensions: 3958
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 3855
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3952
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4876707572
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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