Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30547
         (516 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY070671-1|AAL48142.1|  148|Drosophila melanogaster RH07540p pro...   230   1e-60
AE013599-3413|AAF46862.1|  148|Drosophila melanogaster CG4046-PA...   230   1e-60
AY089671-1|AAL90409.1|  395|Drosophila melanogaster RH44312p pro...    48   1e-05
AE014297-663|AAF54157.3|  395|Drosophila melanogaster CG2957-PA ...    48   1e-05

>AY070671-1|AAL48142.1|  148|Drosophila melanogaster RH07540p
           protein.
          Length = 148

 Score =  230 bits (562), Expect = 1e-60
 Identities = 105/134 (78%), Positives = 122/134 (91%)
 Frame = +2

Query: 2   FGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVDIRVTV 181
           FGRKKTATAVAYCKRG+G+L+VNGRPL+ +EP++LQYKLQEP+LLLGKEKF+ VDIRV V
Sbjct: 15  FGRKKTATAVAYCKRGNGLLKVNGRPLEQIEPKVLQYKLQEPLLLLGKEKFAGVDIRVRV 74

Query: 182 KGGGHVAQVYAIRQAISKALIAFYRNM*TKPQRRKSKDILVQYDRSLLVADPRRCEPKKF 361
            GGGHVAQ+YAIRQAISKAL+AFY+    +  +++ KDILVQYDR+LLV DPRRCEPKKF
Sbjct: 75  SGGGHVAQIYAIRQAISKALVAFYQKYVDEASKKEIKDILVQYDRTLLVGDPRRCEPKKF 134

Query: 362 GGPGARARYQKSYR 403
           GGPGARARYQKSYR
Sbjct: 135 GGPGARARYQKSYR 148


>AE013599-3413|AAF46862.1|  148|Drosophila melanogaster CG4046-PA
           protein.
          Length = 148

 Score =  230 bits (562), Expect = 1e-60
 Identities = 105/134 (78%), Positives = 122/134 (91%)
 Frame = +2

Query: 2   FGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVDIRVTV 181
           FGRKKTATAVAYCKRG+G+L+VNGRPL+ +EP++LQYKLQEP+LLLGKEKF+ VDIRV V
Sbjct: 15  FGRKKTATAVAYCKRGNGLLKVNGRPLEQIEPKVLQYKLQEPLLLLGKEKFAGVDIRVRV 74

Query: 182 KGGGHVAQVYAIRQAISKALIAFYRNM*TKPQRRKSKDILVQYDRSLLVADPRRCEPKKF 361
            GGGHVAQ+YAIRQAISKAL+AFY+    +  +++ KDILVQYDR+LLV DPRRCEPKKF
Sbjct: 75  SGGGHVAQIYAIRQAISKALVAFYQKYVDEASKKEIKDILVQYDRTLLVGDPRRCEPKKF 134

Query: 362 GGPGARARYQKSYR 403
           GGPGARARYQKSYR
Sbjct: 135 GGPGARARYQKSYR 148


>AY089671-1|AAL90409.1|  395|Drosophila melanogaster RH44312p
           protein.
          Length = 395

 Score = 47.6 bits (108), Expect = 1e-05
 Identities = 41/127 (32%), Positives = 56/127 (44%), Gaps = 1/127 (0%)
 Frame = +2

Query: 11  KKTATA-VAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVDIRVTVKG 187
           +KTA A V     G G + +NG+ +   E    + +L  P+     E    VD+   V+G
Sbjct: 276 RKTARADVTVRLPGTGKISINGKDISYFEDENCREQLLFPLQF--SELLGKVDVEANVEG 333

Query: 188 GGHVAQVYAIRQAISKALIAFYRNM*TKPQRRKSKDILVQYDRSLLVADPRRCEPKKFGG 367
           GG   Q  AIR  I+ +L +F      +  R             LL  D RR E KKFG 
Sbjct: 334 GGPSGQAGAIRWGIAMSLRSFVDQEMIESMRLAG----------LLTRDYRRRERKKFGQ 383

Query: 368 PGARARY 388
            GAR +Y
Sbjct: 384 EGARRKY 390


>AE014297-663|AAF54157.3|  395|Drosophila melanogaster CG2957-PA
           protein.
          Length = 395

 Score = 47.6 bits (108), Expect = 1e-05
 Identities = 41/127 (32%), Positives = 56/127 (44%), Gaps = 1/127 (0%)
 Frame = +2

Query: 11  KKTATA-VAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVDIRVTVKG 187
           +KTA A V     G G + +NG+ +   E    + +L  P+     E    VD+   V+G
Sbjct: 276 RKTARADVTVRLPGTGKISINGKDISYFEDENCREQLLFPLQF--SELLGKVDVEANVEG 333

Query: 188 GGHVAQVYAIRQAISKALIAFYRNM*TKPQRRKSKDILVQYDRSLLVADPRRCEPKKFGG 367
           GG   Q  AIR  I+ +L +F      +  R             LL  D RR E KKFG 
Sbjct: 334 GGPSGQAGAIRWGIAMSLRSFVDQEMIESMRLAG----------LLTRDYRRRERKKFGQ 383

Query: 368 PGARARY 388
            GAR +Y
Sbjct: 384 EGARRKY 390


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,276,936
Number of Sequences: 53049
Number of extensions: 451918
Number of successful extensions: 1283
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1252
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1279
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1887744768
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)