Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30547
         (516 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78413-6|CAB01658.1|  144|Caenorhabditis elegans Hypothetical pr...   200   4e-52
Z68341-1|CAA92764.1|  258|Caenorhabditis elegans Hypothetical pr...    28   4.6  
L11247-4|AAK84520.1|  392|Caenorhabditis elegans Hypothetical pr...    28   4.6  
U50193-2|AAA91248.1|  974|Caenorhabditis elegans Elongation fact...    27   6.0  
M86958-1|AAA21824.1|  849|Caenorhabditis elegans eft-1 protein.        27   6.0  
U55364-3|AAN84821.1|  349|Caenorhabditis elegans Hypothetical pr...    27   8.0  
U23525-10|AAC46571.2|  503|Caenorhabditis elegans Hypothetical p...    27   8.0  
U23525-9|ABC71820.1|  766|Caenorhabditis elegans Hypothetical pr...    27   8.0  

>Z78413-6|CAB01658.1|  144|Caenorhabditis elegans Hypothetical
           protein T01C3.6 protein.
          Length = 144

 Score =  200 bits (489), Expect = 4e-52
 Identities = 89/134 (66%), Positives = 114/134 (85%)
 Frame = +2

Query: 2   FGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVDIRVTV 181
           FGRKKTATAVA+CK+G G+++VNGRPL+ +EP++L+ KLQEP+LL+GKE+F  VDIR+ V
Sbjct: 11  FGRKKTATAVAHCKKGQGLIKVNGRPLEFLEPQILRIKLQEPLLLVGKERFQDVDIRIRV 70

Query: 182 KGGGHVAQVYAIRQAISKALIAFYRNM*TKPQRRKSKDILVQYDRSLLVADPRRCEPKKF 361
            GGGHVAQ+YA+RQA++KAL+A+Y     +  +R+ K+I   YD+SLLVADPRR E KKF
Sbjct: 71  SGGGHVAQIYAVRQALAKALVAYYHKYVDEQSKRELKNIFAAYDKSLLVADPRRRESKKF 130

Query: 362 GGPGARARYQKSYR 403
           GGPGARARYQKSYR
Sbjct: 131 GGPGARARYQKSYR 144


>Z68341-1|CAA92764.1|  258|Caenorhabditis elegans Hypothetical
           protein F01G4.2 protein.
          Length = 258

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +1

Query: 97  QTAAVQTSGTYPFARQGKILYGRHQSDSQG 186
           QT  V   GT+   R G  L G H+ D+ G
Sbjct: 113 QTIDVNVLGTFNVIRHGVALMGEHEKDANG 142


>L11247-4|AAK84520.1|  392|Caenorhabditis elegans Hypothetical
           protein F09G8.3 protein.
          Length = 392

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +2

Query: 320 LLVADPRRCEPKKFGGPGARARY 388
           LL  DPR+ E  K   PGARA++
Sbjct: 365 LLTLDPRKNERSKVNQPGARAKW 387


>U50193-2|AAA91248.1|  974|Caenorhabditis elegans Elongation factor
           protein 1 protein.
          Length = 974

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
 Frame = -3

Query: 193 TTTLDCHSDVDHREFFLAEQKD-RF--LKFVLQQSG 95
           TT LDC  +  H EF+ AE  D RF  + F+ +Q G
Sbjct: 146 TTFLDCLMEQTHPEFYRAEDADARFTDILFIEKQRG 181


>M86958-1|AAA21824.1|  849|Caenorhabditis elegans eft-1 protein.
          Length = 849

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
 Frame = -3

Query: 193 TTTLDCHSDVDHREFFLAEQKD-RF--LKFVLQQSG 95
           TT LDC  +  H EF+ AE  D RF  + F+ +Q G
Sbjct: 21  TTFLDCLMEQTHPEFYRAEDADARFTDILFIEKQRG 56


>U55364-3|AAN84821.1|  349|Caenorhabditis elegans Hypothetical
           protein F21C10.12 protein.
          Length = 349

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 8/28 (28%), Positives = 17/28 (60%)
 Frame = +2

Query: 398 YR*AFNETIGWYRRGGLLSLRYHWMVYI 481
           Y+  +++ +G++ + G+L    HW  YI
Sbjct: 156 YQIGYSDALGYWPKRGILDAEEHWWYYI 183


>U23525-10|AAC46571.2|  503|Caenorhabditis elegans Hypothetical
           protein K11G12.6a protein.
          Length = 503

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = +1

Query: 133 FARQGKILYGRHQSDSQGWWSCSTSLRYQTSYFEGSDRLLPKYVDE 270
           FAR    +Y       + WW+ S    Y  ++ +G+D LL  Y+ E
Sbjct: 399 FARAKLYMYHFTDIGDKNWWTRSFQEEYMPTFNKGNDALL-NYLTE 443


>U23525-9|ABC71820.1|  766|Caenorhabditis elegans Hypothetical
           protein K11G12.6b protein.
          Length = 766

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = +1

Query: 133 FARQGKILYGRHQSDSQGWWSCSTSLRYQTSYFEGSDRLLPKYVDE 270
           FAR    +Y       + WW+ S    Y  ++ +G+D LL  Y+ E
Sbjct: 662 FARAKLYMYHFTDIGDKNWWTRSFQEEYMPTFNKGNDALL-NYLTE 706


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,616,051
Number of Sequences: 27780
Number of extensions: 222926
Number of successful extensions: 584
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 573
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 583
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)