Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30547
         (516 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g04230.1 68416.m00447 40S ribosomal protein S16 (RPS16B) simi...   192   9e-50
At2g09990.1 68415.m01037 40S ribosomal protein S16 (RPS16A) Same...   192   9e-50
At5g18380.1 68418.m02162 40S ribosomal protein S16 (RPS16C)           192   1e-49
At3g49080.1 68416.m05362 ribosomal protein S9 family protein con...    45   3e-05
At4g11090.1 68417.m01801 expressed protein other hypothetical pr...    27   5.7  
At5g43120.1 68418.m05264 tetratricopeptide repeat (TPR)-containi...    27   7.5  
At2g36350.1 68415.m04461 protein kinase, putative similar to pro...    27   7.5  
At4g28680.1 68417.m04098 tyrosine decarboxylase, putative simila...    27   9.9  
At1g79180.1 68414.m09232 myb family transcription factor (MYB63)...    27   9.9  

>At3g04230.1 68416.m00447 40S ribosomal protein S16 (RPS16B) similar
           to 40S ribosomal protein S16 GB:AAD22696 [Arabidopsis
           thaliana]
          Length = 146

 Score =  192 bits (469), Expect = 9e-50
 Identities = 83/134 (61%), Positives = 114/134 (85%)
 Frame = +2

Query: 2   FGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVDIRVTV 181
           FGRKKTATAV YCKRG GM+++NG P++L +P +L++K+ EP+LLLGK +F+ VD+R+  
Sbjct: 13  FGRKKTATAVTYCKRGSGMIKLNGSPIELYQPEILRFKIFEPVLLLGKHRFAGVDMRIRA 72

Query: 182 KGGGHVAQVYAIRQAISKALIAFYRNM*TKPQRRKSKDILVQYDRSLLVADPRRCEPKKF 361
            GGG+ ++VYAIRQ+I+KAL+A+Y+    +  +++ KDIL++YDR+LLVADPRRCE KKF
Sbjct: 73  TGGGNTSRVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILMRYDRTLLVADPRRCESKKF 132

Query: 362 GGPGARARYQKSYR 403
           GGPGARAR+QKSYR
Sbjct: 133 GGPGARARFQKSYR 146


>At2g09990.1 68415.m01037 40S ribosomal protein S16 (RPS16A) Same as
           GB:Q42340
          Length = 146

 Score =  192 bits (469), Expect = 9e-50
 Identities = 84/134 (62%), Positives = 114/134 (85%)
 Frame = +2

Query: 2   FGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVDIRVTV 181
           FGRKKTA AV +CKRG G++++NG P++L +P +L++K+ EPILLLGK +F+ V++R+ V
Sbjct: 13  FGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPILLLGKHRFAGVNMRIRV 72

Query: 182 KGGGHVAQVYAIRQAISKALIAFYRNM*TKPQRRKSKDILVQYDRSLLVADPRRCEPKKF 361
            GGGH +QVYAIRQ+I+KAL+A+Y+    +  +++ KDILV+YDR+LLVADPRRCEPKKF
Sbjct: 73  NGGGHTSQVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKF 132

Query: 362 GGPGARARYQKSYR 403
           GG GAR+RYQKSYR
Sbjct: 133 GGRGARSRYQKSYR 146


>At5g18380.1 68418.m02162 40S ribosomal protein S16 (RPS16C)
          Length = 146

 Score =  192 bits (468), Expect = 1e-49
 Identities = 83/134 (61%), Positives = 114/134 (85%)
 Frame = +2

Query: 2   FGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVDIRVTV 181
           FGRKKTA AV +CKRG G++++NG P++L +P +L++K+ EP+LLLGK +F+ V++R+ V
Sbjct: 13  FGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPVLLLGKHRFAGVNMRIRV 72

Query: 182 KGGGHVAQVYAIRQAISKALIAFYRNM*TKPQRRKSKDILVQYDRSLLVADPRRCEPKKF 361
            GGGH +QVYAIRQ+I+KAL+A+Y+    +  +++ KDILV+YDR+LLVADPRRCEPKKF
Sbjct: 73  NGGGHTSQVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKF 132

Query: 362 GGPGARARYQKSYR 403
           GG GAR+RYQKSYR
Sbjct: 133 GGRGARSRYQKSYR 146


>At3g49080.1 68416.m05362 ribosomal protein S9 family protein
           contains Pfam profile PF00380: ribosomal protein S9
          Length = 430

 Score = 45.2 bits (102), Expect = 3e-05
 Identities = 28/79 (35%), Positives = 42/79 (53%)
 Frame = +2

Query: 5   GRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVDIRVTVK 184
           GR+K + A  + + G G  +VN +  D+  P +L ++      L   +     DI+ TVK
Sbjct: 310 GRRKCSIARVWIQPGEGKFQVNEKEFDVYFP-MLDHRAALLRPLAETKTLGRWDIKCTVK 368

Query: 185 GGGHVAQVYAIRQAISKAL 241
           GGG   QV AI+  IS+AL
Sbjct: 369 GGGTTGQVGAIQLGISRAL 387


>At4g11090.1 68417.m01801 expressed protein other hypothetical
           proteins - Arabidopsis thaliana
          Length = 432

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 9/30 (30%), Positives = 14/30 (46%)
 Frame = +3

Query: 75  VHWTWLSPDCCSTNFRNLSFCSARKNSLWS 164
           ++W W   DC    F +L F    +N  W+
Sbjct: 121 LNWKWKPNDCSLPRFDSLRFLQLMRNKSWA 150


>At5g43120.1 68418.m05264 tetratricopeptide repeat (TPR)-containing
           protein contains Pfam profile PF00515: TPR Domain
          Length = 588

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +2

Query: 125 PILLLGKEKFSMVDIRVTVKGGGHVAQVYAIRQAIS 232
           P+L L + K S V+ RV V+  GH+A      +A++
Sbjct: 139 PLLELMRRKMSWVEQRVVVRALGHLASYETTFEAVA 174


>At2g36350.1 68415.m04461 protein kinase, putative similar to
           protein kinase KIPK (KCBP-interacting protein kinase)
           [Arabidopsis thaliana] gi|7716430|gb|AAF68383
          Length = 949

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = +2

Query: 269 KPQRRKSKDILVQYDRSL--LVADPRRCEPKKFGG 367
           KP++ K  D+L Q  RSL  LVA+P       F G
Sbjct: 766 KPRKPKRPDLLTQQFRSLPQLVAEPTEARSNSFVG 800


>At4g28680.1 68417.m04098 tyrosine decarboxylase, putative similar
           to SP|P54768 Tyrosine/DOPA decarboxylase 1 [Includes:
           DOPA decarboxylase (EC 4.1.1.28) (DDC); Tyrosine
           decarboxylase (EC 4.1.1.25)] {Papaver somniferum},
           SP|Q06086 Tyrosine decarboxylase 2 (EC 4.1.1.25)
           {Petroselinum crispum}; contains Pfam profile PF00282:
           Pyridoxal-dependent decarboxylase conserved domain
          Length = 545

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = -3

Query: 286 FPSLRLRLHISVEGDQSLRNSLSDSVNL 203
           F SL+L + + + G ++LRN + D VNL
Sbjct: 415 FRSLKLWMVLRLYGSENLRNFIRDHVNL 442


>At1g79180.1 68414.m09232 myb family transcription factor (MYB63)
           similar to myb-related protein GI:1370139 from
           [Lycopersicon esculentum]
          Length = 294

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
 Frame = -2

Query: 410 RLNGKISGIWHGHLDHRTSWARSDAGQP--PANSYRIELG 297
           R + +I  +WH HL  R + +   A +P  P +S  +  G
Sbjct: 101 RTDNEIKNVWHTHLKKRLAQSSGTADEPASPCSSDSVSRG 140


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,137,527
Number of Sequences: 28952
Number of extensions: 214879
Number of successful extensions: 593
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 586
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 589
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)