Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30545X
(454 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC17G9.07 |rps2402|rps24-2|40S ribosomal protein S24|Schizosac... 93 1e-20
SPAC17G6.06 |rps2401|rps24-1, rps24|40S ribosomal protein S24|Sc... 89 3e-19
SPCC417.06c |ppk35|mug27|serine/threonine protein kinase Ppk35|S... 28 0.77
SPAC22A12.11 |dak1||dihydroxyacetone kinase Dak1|Schizosaccharom... 27 1.0
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces... 27 1.3
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc... 25 4.1
SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces pombe... 25 4.1
SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces p... 25 7.2
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ... 25 7.2
SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces pomb... 25 7.2
SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit Rpt2|Schi... 25 7.2
SPBC25B2.04c |||mitochondrial ribosome assembly protein|Schizosa... 25 7.2
SPBC16E9.01c |php4|SPBP16F5.09c|CCAAT-binding factor complex sub... 24 9.5
>SPBC17G9.07 |rps2402|rps24-2|40S ribosomal protein
S24|Schizosaccharomyces pombe|chr 2|||Manual
Length = 134
Score = 93.5 bits (222), Expect = 1e-20
Identities = 43/63 (68%), Positives = 50/63 (79%)
Frame = -3
Query: 443 TIRTRKLMTNRLLARKQMVCDVLHPGKPAVSKTEIREKLAKMYKVTPDVVFVFGFKTNFG 264
TIRTRK MTNRLL RKQMV D+LHPGK +SK EIREKLA+MYK + V FG +T+FG
Sbjct: 6 TIRTRKFMTNRLLQRKQMVVDILHPGKANLSKNEIREKLAQMYKTDSECVQAFGLRTHFG 65
Query: 263 GGK 255
GG+
Sbjct: 66 GGR 68
Score = 61.3 bits (142), Expect = 7e-11
Identities = 31/54 (57%), Positives = 40/54 (74%), Gaps = 1/54 (1%)
Frame = -2
Query: 258 QATGFALIYDTLDLAKKFEPKHRLARHGLYEK-KRPTRKQRKERKNRMKKVRGT 100
++TGFALIYD+ + KKFEP +RL R G E ++ R+QRK+RKNR KKV GT
Sbjct: 68 RSTGFALIYDSTESMKKFEPHYRLVRVGQAEPIQKVARQQRKQRKNRGKKVFGT 121
>SPAC17G6.06 |rps2401|rps24-1, rps24|40S ribosomal protein
S24|Schizosaccharomyces pombe|chr 1|||Manual
Length = 134
Score = 89.0 bits (211), Expect = 3e-19
Identities = 39/63 (61%), Positives = 48/63 (76%)
Frame = -3
Query: 443 TIRTRKLMTNRLLARKQMVCDVLHPGKPAVSKTEIREKLAKMYKVTPDVVFVFGFKTNFG 264
TIRTRK MTNRLL RKQMV D+LHPGK +SK ++REKL +MYK V FG +T++G
Sbjct: 6 TIRTRKFMTNRLLQRKQMVVDILHPGKANISKNDLREKLGQMYKTDASAVQAFGLRTHYG 65
Query: 263 GGK 255
GG+
Sbjct: 66 GGR 68
Score = 60.9 bits (141), Expect = 9e-11
Identities = 31/54 (57%), Positives = 39/54 (72%), Gaps = 1/54 (1%)
Frame = -2
Query: 258 QATGFALIYDTLDLAKKFEPKHRLARHGLYEK-KRPTRKQRKERKNRMKKVRGT 100
+ TGFALIYD ++ KKFEP +RL R G E ++ R+QRK+RKNR KKV GT
Sbjct: 68 RTTGFALIYDDVEAMKKFEPHYRLVRVGHAEPIQKVARQQRKQRKNRGKKVFGT 121
>SPCC417.06c |ppk35|mug27|serine/threonine protein kinase
Ppk35|Schizosaccharomyces pombe|chr 3|||Manual
Length = 624
Score = 27.9 bits (59), Expect = 0.77
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -2
Query: 210 KFEPKHRLARHGLYEKKRPTRKQRKERKNRMKK 112
K+ P R G + +KR RK++ E+KN K
Sbjct: 539 KYRPNARKPLVGRHREKRQLRKEKPEKKNNSTK 571
>SPAC22A12.11 |dak1||dihydroxyacetone kinase
Dak1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 580
Score = 27.5 bits (58), Expect = 1.0
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -3
Query: 344 EIREKLAKMYKVTPDVVFVFGFKTNFGG 261
+++E LAK YK+ P +F F T+ G
Sbjct: 286 KVKEALAKEYKINPVRIFAGPFTTSLNG 313
>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1485
Score = 27.1 bits (57), Expect = 1.3
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = -2
Query: 297 SVRIRFQDKLRRWQATGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERK-NR 121
S+ ++F KL R QAT + +D KK++ + YE + T ++RKE N
Sbjct: 1013 SLEVKF--KLSRTQATSNMIAFDASGRIKKYDSVEDILTE-FYEVRLRTYQRRKEHMVNE 1069
Query: 120 MKK 112
++K
Sbjct: 1070 LEK 1072
>SPBC30D10.10c |tor1||phosphatidylinositol kinase
Tor1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2335
Score = 25.4 bits (53), Expect = 4.1
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +3
Query: 219 DRVCRRSKRIQLLATSEVCLETEY 290
D VC+R ++QL +EV L+ E+
Sbjct: 197 DVVCQREAKVQLQCFNEVLLQAEH 220
>SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 25.4 bits (53), Expect = 4.1
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = +1
Query: 241 SESSCLPPPKFVLKPN 288
SES CLP F +KPN
Sbjct: 35 SESLCLPKTSFPIKPN 50
>SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 202
Score = 24.6 bits (51), Expect = 7.2
Identities = 9/35 (25%), Positives = 21/35 (60%)
Frame = -2
Query: 216 AKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKK 112
+KK + + + +K +K++KE+K+++KK
Sbjct: 125 SKKVKVRKTSGKESSKREKSKKKKEKKEKKDKLKK 159
>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1854
Score = 24.6 bits (51), Expect = 7.2
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +1
Query: 262 PPKFVLKPNTNTTSGVTLYILASFS 336
PPK LKP+ +T+ ++ Y LA S
Sbjct: 818 PPKEPLKPSLDTSPELSKYSLAKLS 842
>SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 440
Score = 24.6 bits (51), Expect = 7.2
Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 5/39 (12%)
Frame = -2
Query: 210 KFEPKHRLARHGLYEKKRPT-----RKQRKERKNRMKKV 109
+F KH L RHG EKKR R+Q + R KKV
Sbjct: 58 EFGTKH-LRRHGRIEKKRRNWKGLFRRQSNWKDGRCKKV 95
>SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit
Rpt2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 448
Score = 24.6 bits (51), Expect = 7.2
Identities = 8/23 (34%), Positives = 17/23 (73%)
Frame = -2
Query: 168 EKKRPTRKQRKERKNRMKKVRGT 100
E+ +P ++ +E +NR+ ++RGT
Sbjct: 90 ERLKPQDERTQEERNRVDEIRGT 112
>SPBC25B2.04c |||mitochondrial ribosome assembly
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 328
Score = 24.6 bits (51), Expect = 7.2
Identities = 16/61 (26%), Positives = 26/61 (42%)
Frame = +1
Query: 190 PVLGLELLGQIECVVDQSESSCLPPPKFVLKPNTNTTSGVTLYILASFSRISVLLTAGFP 369
P ELL I +VDQ+ ++ FV PNT +S + + + + +P
Sbjct: 123 PYFAKELLRLIRTLVDQASANGRVYVYFVGMPNTGKSSILNSLRNVALRKSKSAIVGNYP 182
Query: 370 G 372
G
Sbjct: 183 G 183
>SPBC16E9.01c |php4|SPBP16F5.09c|CCAAT-binding factor complex
subunit Php4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 295
Score = 24.2 bits (50), Expect = 9.5
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 6/45 (13%)
Frame = +1
Query: 205 ELLGQIECVVDQSESSCLPPPK------FVLKPNTNTTSGVTLYI 321
ELL Q+E + Q ++S L PK V+KP++ TT Y+
Sbjct: 92 ELLEQLEMLQAQLKNSTLDSPKEVEVNSEVVKPDSATTENENRYV 136
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,759,474
Number of Sequences: 5004
Number of extensions: 34824
Number of successful extensions: 119
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 168258430
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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