BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdV30545X (454 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC17G9.07 |rps2402|rps24-2|40S ribosomal protein S24|Schizosac... 93 1e-20 SPAC17G6.06 |rps2401|rps24-1, rps24|40S ribosomal protein S24|Sc... 89 3e-19 SPCC417.06c |ppk35|mug27|serine/threonine protein kinase Ppk35|S... 28 0.77 SPAC22A12.11 |dak1||dihydroxyacetone kinase Dak1|Schizosaccharom... 27 1.0 SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces... 27 1.3 SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc... 25 4.1 SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces pombe... 25 4.1 SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces p... 25 7.2 SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ... 25 7.2 SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces pomb... 25 7.2 SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit Rpt2|Schi... 25 7.2 SPBC25B2.04c |||mitochondrial ribosome assembly protein|Schizosa... 25 7.2 SPBC16E9.01c |php4|SPBP16F5.09c|CCAAT-binding factor complex sub... 24 9.5 >SPBC17G9.07 |rps2402|rps24-2|40S ribosomal protein S24|Schizosaccharomyces pombe|chr 2|||Manual Length = 134 Score = 93.5 bits (222), Expect = 1e-20 Identities = 43/63 (68%), Positives = 50/63 (79%) Frame = -3 Query: 443 TIRTRKLMTNRLLARKQMVCDVLHPGKPAVSKTEIREKLAKMYKVTPDVVFVFGFKTNFG 264 TIRTRK MTNRLL RKQMV D+LHPGK +SK EIREKLA+MYK + V FG +T+FG Sbjct: 6 TIRTRKFMTNRLLQRKQMVVDILHPGKANLSKNEIREKLAQMYKTDSECVQAFGLRTHFG 65 Query: 263 GGK 255 GG+ Sbjct: 66 GGR 68 Score = 61.3 bits (142), Expect = 7e-11 Identities = 31/54 (57%), Positives = 40/54 (74%), Gaps = 1/54 (1%) Frame = -2 Query: 258 QATGFALIYDTLDLAKKFEPKHRLARHGLYEK-KRPTRKQRKERKNRMKKVRGT 100 ++TGFALIYD+ + KKFEP +RL R G E ++ R+QRK+RKNR KKV GT Sbjct: 68 RSTGFALIYDSTESMKKFEPHYRLVRVGQAEPIQKVARQQRKQRKNRGKKVFGT 121 >SPAC17G6.06 |rps2401|rps24-1, rps24|40S ribosomal protein S24|Schizosaccharomyces pombe|chr 1|||Manual Length = 134 Score = 89.0 bits (211), Expect = 3e-19 Identities = 39/63 (61%), Positives = 48/63 (76%) Frame = -3 Query: 443 TIRTRKLMTNRLLARKQMVCDVLHPGKPAVSKTEIREKLAKMYKVTPDVVFVFGFKTNFG 264 TIRTRK MTNRLL RKQMV D+LHPGK +SK ++REKL +MYK V FG +T++G Sbjct: 6 TIRTRKFMTNRLLQRKQMVVDILHPGKANISKNDLREKLGQMYKTDASAVQAFGLRTHYG 65 Query: 263 GGK 255 GG+ Sbjct: 66 GGR 68 Score = 60.9 bits (141), Expect = 9e-11 Identities = 31/54 (57%), Positives = 39/54 (72%), Gaps = 1/54 (1%) Frame = -2 Query: 258 QATGFALIYDTLDLAKKFEPKHRLARHGLYEK-KRPTRKQRKERKNRMKKVRGT 100 + TGFALIYD ++ KKFEP +RL R G E ++ R+QRK+RKNR KKV GT Sbjct: 68 RTTGFALIYDDVEAMKKFEPHYRLVRVGHAEPIQKVARQQRKQRKNRGKKVFGT 121 >SPCC417.06c |ppk35|mug27|serine/threonine protein kinase Ppk35|Schizosaccharomyces pombe|chr 3|||Manual Length = 624 Score = 27.9 bits (59), Expect = 0.77 Identities = 12/33 (36%), Positives = 18/33 (54%) Frame = -2 Query: 210 KFEPKHRLARHGLYEKKRPTRKQRKERKNRMKK 112 K+ P R G + +KR RK++ E+KN K Sbjct: 539 KYRPNARKPLVGRHREKRQLRKEKPEKKNNSTK 571 >SPAC22A12.11 |dak1||dihydroxyacetone kinase Dak1|Schizosaccharomyces pombe|chr 1|||Manual Length = 580 Score = 27.5 bits (58), Expect = 1.0 Identities = 11/28 (39%), Positives = 17/28 (60%) Frame = -3 Query: 344 EIREKLAKMYKVTPDVVFVFGFKTNFGG 261 +++E LAK YK+ P +F F T+ G Sbjct: 286 KVKEALAKEYKINPVRIFAGPFTTSLNG 313 >SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces pombe|chr 2|||Manual Length = 1485 Score = 27.1 bits (57), Expect = 1.3 Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 1/63 (1%) Frame = -2 Query: 297 SVRIRFQDKLRRWQATGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERK-NR 121 S+ ++F KL R QAT + +D KK++ + YE + T ++RKE N Sbjct: 1013 SLEVKF--KLSRTQATSNMIAFDASGRIKKYDSVEDILTE-FYEVRLRTYQRRKEHMVNE 1069 Query: 120 MKK 112 ++K Sbjct: 1070 LEK 1072 >SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosaccharomyces pombe|chr 2|||Manual Length = 2335 Score = 25.4 bits (53), Expect = 4.1 Identities = 10/24 (41%), Positives = 16/24 (66%) Frame = +3 Query: 219 DRVCRRSKRIQLLATSEVCLETEY 290 D VC+R ++QL +EV L+ E+ Sbjct: 197 DVVCQREAKVQLQCFNEVLLQAEH 220 >SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces pombe|chr 3|||Manual Length = 973 Score = 25.4 bits (53), Expect = 4.1 Identities = 10/16 (62%), Positives = 11/16 (68%) Frame = +1 Query: 241 SESSCLPPPKFVLKPN 288 SES CLP F +KPN Sbjct: 35 SESLCLPKTSFPIKPN 50 >SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 202 Score = 24.6 bits (51), Expect = 7.2 Identities = 9/35 (25%), Positives = 21/35 (60%) Frame = -2 Query: 216 AKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKK 112 +KK + + + +K +K++KE+K+++KK Sbjct: 125 SKKVKVRKTSGKESSKREKSKKKKEKKEKKDKLKK 159 >SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr 1|||Manual Length = 1854 Score = 24.6 bits (51), Expect = 7.2 Identities = 11/25 (44%), Positives = 16/25 (64%) Frame = +1 Query: 262 PPKFVLKPNTNTTSGVTLYILASFS 336 PPK LKP+ +T+ ++ Y LA S Sbjct: 818 PPKEPLKPSLDTSPELSKYSLAKLS 842 >SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces pombe|chr 2|||Manual Length = 440 Score = 24.6 bits (51), Expect = 7.2 Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 5/39 (12%) Frame = -2 Query: 210 KFEPKHRLARHGLYEKKRPT-----RKQRKERKNRMKKV 109 +F KH L RHG EKKR R+Q + R KKV Sbjct: 58 EFGTKH-LRRHGRIEKKRRNWKGLFRRQSNWKDGRCKKV 95 >SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit Rpt2|Schizosaccharomyces pombe|chr 2|||Manual Length = 448 Score = 24.6 bits (51), Expect = 7.2 Identities = 8/23 (34%), Positives = 17/23 (73%) Frame = -2 Query: 168 EKKRPTRKQRKERKNRMKKVRGT 100 E+ +P ++ +E +NR+ ++RGT Sbjct: 90 ERLKPQDERTQEERNRVDEIRGT 112 >SPBC25B2.04c |||mitochondrial ribosome assembly protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 328 Score = 24.6 bits (51), Expect = 7.2 Identities = 16/61 (26%), Positives = 26/61 (42%) Frame = +1 Query: 190 PVLGLELLGQIECVVDQSESSCLPPPKFVLKPNTNTTSGVTLYILASFSRISVLLTAGFP 369 P ELL I +VDQ+ ++ FV PNT +S + + + + +P Sbjct: 123 PYFAKELLRLIRTLVDQASANGRVYVYFVGMPNTGKSSILNSLRNVALRKSKSAIVGNYP 182 Query: 370 G 372 G Sbjct: 183 G 183 >SPBC16E9.01c |php4|SPBP16F5.09c|CCAAT-binding factor complex subunit Php4|Schizosaccharomyces pombe|chr 2|||Manual Length = 295 Score = 24.2 bits (50), Expect = 9.5 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 6/45 (13%) Frame = +1 Query: 205 ELLGQIECVVDQSESSCLPPPK------FVLKPNTNTTSGVTLYI 321 ELL Q+E + Q ++S L PK V+KP++ TT Y+ Sbjct: 92 ELLEQLEMLQAQLKNSTLDSPKEVEVNSEVVKPDSATTENENRYV 136 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,759,474 Number of Sequences: 5004 Number of extensions: 34824 Number of successful extensions: 119 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 107 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 117 length of database: 2,362,478 effective HSP length: 67 effective length of database: 2,027,210 effective search space used: 168258430 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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