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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30545X
         (454 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17G9.07 |rps2402|rps24-2|40S ribosomal protein S24|Schizosac...    93   1e-20
SPAC17G6.06 |rps2401|rps24-1, rps24|40S ribosomal protein S24|Sc...    89   3e-19
SPCC417.06c |ppk35|mug27|serine/threonine protein kinase Ppk35|S...    28   0.77 
SPAC22A12.11 |dak1||dihydroxyacetone kinase Dak1|Schizosaccharom...    27   1.0  
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces...    27   1.3  
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc...    25   4.1  
SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces pombe...    25   4.1  
SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces p...    25   7.2  
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    25   7.2  
SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces pomb...    25   7.2  
SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit Rpt2|Schi...    25   7.2  
SPBC25B2.04c |||mitochondrial ribosome assembly protein|Schizosa...    25   7.2  
SPBC16E9.01c |php4|SPBP16F5.09c|CCAAT-binding factor complex sub...    24   9.5  

>SPBC17G9.07 |rps2402|rps24-2|40S ribosomal protein
           S24|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 134

 Score = 93.5 bits (222), Expect = 1e-20
 Identities = 43/63 (68%), Positives = 50/63 (79%)
 Frame = -3

Query: 443 TIRTRKLMTNRLLARKQMVCDVLHPGKPAVSKTEIREKLAKMYKVTPDVVFVFGFKTNFG 264
           TIRTRK MTNRLL RKQMV D+LHPGK  +SK EIREKLA+MYK   + V  FG +T+FG
Sbjct: 6   TIRTRKFMTNRLLQRKQMVVDILHPGKANLSKNEIREKLAQMYKTDSECVQAFGLRTHFG 65

Query: 263 GGK 255
           GG+
Sbjct: 66  GGR 68



 Score = 61.3 bits (142), Expect = 7e-11
 Identities = 31/54 (57%), Positives = 40/54 (74%), Gaps = 1/54 (1%)
 Frame = -2

Query: 258 QATGFALIYDTLDLAKKFEPKHRLARHGLYEK-KRPTRKQRKERKNRMKKVRGT 100
           ++TGFALIYD+ +  KKFEP +RL R G  E  ++  R+QRK+RKNR KKV GT
Sbjct: 68  RSTGFALIYDSTESMKKFEPHYRLVRVGQAEPIQKVARQQRKQRKNRGKKVFGT 121


>SPAC17G6.06 |rps2401|rps24-1, rps24|40S ribosomal protein
           S24|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 134

 Score = 89.0 bits (211), Expect = 3e-19
 Identities = 39/63 (61%), Positives = 48/63 (76%)
 Frame = -3

Query: 443 TIRTRKLMTNRLLARKQMVCDVLHPGKPAVSKTEIREKLAKMYKVTPDVVFVFGFKTNFG 264
           TIRTRK MTNRLL RKQMV D+LHPGK  +SK ++REKL +MYK     V  FG +T++G
Sbjct: 6   TIRTRKFMTNRLLQRKQMVVDILHPGKANISKNDLREKLGQMYKTDASAVQAFGLRTHYG 65

Query: 263 GGK 255
           GG+
Sbjct: 66  GGR 68



 Score = 60.9 bits (141), Expect = 9e-11
 Identities = 31/54 (57%), Positives = 39/54 (72%), Gaps = 1/54 (1%)
 Frame = -2

Query: 258 QATGFALIYDTLDLAKKFEPKHRLARHGLYEK-KRPTRKQRKERKNRMKKVRGT 100
           + TGFALIYD ++  KKFEP +RL R G  E  ++  R+QRK+RKNR KKV GT
Sbjct: 68  RTTGFALIYDDVEAMKKFEPHYRLVRVGHAEPIQKVARQQRKQRKNRGKKVFGT 121


>SPCC417.06c |ppk35|mug27|serine/threonine protein kinase
           Ppk35|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 624

 Score = 27.9 bits (59), Expect = 0.77
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -2

Query: 210 KFEPKHRLARHGLYEKKRPTRKQRKERKNRMKK 112
           K+ P  R    G + +KR  RK++ E+KN   K
Sbjct: 539 KYRPNARKPLVGRHREKRQLRKEKPEKKNNSTK 571


>SPAC22A12.11 |dak1||dihydroxyacetone kinase
           Dak1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 580

 Score = 27.5 bits (58), Expect = 1.0
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -3

Query: 344 EIREKLAKMYKVTPDVVFVFGFKTNFGG 261
           +++E LAK YK+ P  +F   F T+  G
Sbjct: 286 KVKEALAKEYKINPVRIFAGPFTTSLNG 313


>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1485

 Score = 27.1 bits (57), Expect = 1.3
 Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
 Frame = -2

Query: 297  SVRIRFQDKLRRWQATGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERK-NR 121
            S+ ++F  KL R QAT   + +D     KK++    +     YE +  T ++RKE   N 
Sbjct: 1013 SLEVKF--KLSRTQATSNMIAFDASGRIKKYDSVEDILTE-FYEVRLRTYQRRKEHMVNE 1069

Query: 120  MKK 112
            ++K
Sbjct: 1070 LEK 1072


>SPBC30D10.10c |tor1||phosphatidylinositol kinase
           Tor1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2335

 Score = 25.4 bits (53), Expect = 4.1
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +3

Query: 219 DRVCRRSKRIQLLATSEVCLETEY 290
           D VC+R  ++QL   +EV L+ E+
Sbjct: 197 DVVCQREAKVQLQCFNEVLLQAEH 220


>SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 25.4 bits (53), Expect = 4.1
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +1

Query: 241 SESSCLPPPKFVLKPN 288
           SES CLP   F +KPN
Sbjct: 35  SESLCLPKTSFPIKPN 50


>SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 202

 Score = 24.6 bits (51), Expect = 7.2
 Identities = 9/35 (25%), Positives = 21/35 (60%)
 Frame = -2

Query: 216 AKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKK 112
           +KK + +    +     +K   +K++KE+K+++KK
Sbjct: 125 SKKVKVRKTSGKESSKREKSKKKKEKKEKKDKLKK 159


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1854

 Score = 24.6 bits (51), Expect = 7.2
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +1

Query: 262 PPKFVLKPNTNTTSGVTLYILASFS 336
           PPK  LKP+ +T+  ++ Y LA  S
Sbjct: 818 PPKEPLKPSLDTSPELSKYSLAKLS 842


>SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 440

 Score = 24.6 bits (51), Expect = 7.2
 Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 5/39 (12%)
 Frame = -2

Query: 210 KFEPKHRLARHGLYEKKRPT-----RKQRKERKNRMKKV 109
           +F  KH L RHG  EKKR       R+Q   +  R KKV
Sbjct: 58  EFGTKH-LRRHGRIEKKRRNWKGLFRRQSNWKDGRCKKV 95


>SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit
           Rpt2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 448

 Score = 24.6 bits (51), Expect = 7.2
 Identities = 8/23 (34%), Positives = 17/23 (73%)
 Frame = -2

Query: 168 EKKRPTRKQRKERKNRMKKVRGT 100
           E+ +P  ++ +E +NR+ ++RGT
Sbjct: 90  ERLKPQDERTQEERNRVDEIRGT 112


>SPBC25B2.04c |||mitochondrial ribosome assembly
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 328

 Score = 24.6 bits (51), Expect = 7.2
 Identities = 16/61 (26%), Positives = 26/61 (42%)
 Frame = +1

Query: 190 PVLGLELLGQIECVVDQSESSCLPPPKFVLKPNTNTTSGVTLYILASFSRISVLLTAGFP 369
           P    ELL  I  +VDQ+ ++      FV  PNT  +S +      +  +    +   +P
Sbjct: 123 PYFAKELLRLIRTLVDQASANGRVYVYFVGMPNTGKSSILNSLRNVALRKSKSAIVGNYP 182

Query: 370 G 372
           G
Sbjct: 183 G 183


>SPBC16E9.01c |php4|SPBP16F5.09c|CCAAT-binding factor complex
           subunit Php4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 295

 Score = 24.2 bits (50), Expect = 9.5
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 6/45 (13%)
 Frame = +1

Query: 205 ELLGQIECVVDQSESSCLPPPK------FVLKPNTNTTSGVTLYI 321
           ELL Q+E +  Q ++S L  PK       V+KP++ TT     Y+
Sbjct: 92  ELLEQLEMLQAQLKNSTLDSPKEVEVNSEVVKPDSATTENENRYV 136


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,759,474
Number of Sequences: 5004
Number of extensions: 34824
Number of successful extensions: 119
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 168258430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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