Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30545X
(454 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0550 - 30151494-30151526,30151620-30151706,30152458-301526... 91 3e-19
06_03_0440 + 20815528-20815653,20815742-20815912,20816501-208165... 88 4e-18
02_02_0153 - 7258002-7258034,7258137-7258223,7258991-7259161,725... 88 4e-18
01_01_0502 - 3688940-3689149,3689180-3689251,3690028-3690064,369... 31 0.57
12_02_0342 - 17742326-17742356,17742503-17742621,17743148-177431... 30 1.0
02_05_0473 + 29319824-29322511,29322659-29322820,29324133-293242... 28 3.1
07_01_1045 + 9131301-9131483,9131652-9131717,9132433-9132513,913... 27 5.3
04_04_1214 - 31798271-31799134,31799218-31799301,31799469-317996... 27 5.3
01_05_0740 - 24809951-24810394,24810622-24810700,24811651-248118... 27 5.3
12_02_0205 - 15506167-15507576 27 9.3
11_04_0350 - 16658497-16659015 27 9.3
>01_06_0550 -
30151494-30151526,30151620-30151706,30152458-30152628,
30152716-30152757,30152856-30152939
Length = 138
Score = 91.5 bits (217), Expect = 3e-19
Identities = 41/64 (64%), Positives = 54/64 (84%), Gaps = 1/64 (1%)
Frame = -3
Query: 443 TIRTRKLMTNRLLARKQMVCDVLHPGKPAVSKTEIREKLAKMYKV-TPDVVFVFGFKTNF 267
T+RTRK MTNRLL+RKQ V +V+HPG+P VSK E++EKLAK+Y+V + +FVF F+T+F
Sbjct: 11 TLRTRKFMTNRLLSRKQFVLEVIHPGRPNVSKAELKEKLAKLYEVKDANCIFVFKFRTHF 70
Query: 266 GGGK 255
GGGK
Sbjct: 71 GGGK 74
Score = 77.4 bits (182), Expect = 5e-15
Identities = 36/68 (52%), Positives = 46/68 (67%)
Frame = -2
Query: 306 SRCSVRIRFQDKLRRWQATGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERK 127
+ C +F+ ++TGF LIYD LD AKK+EPK+RL R+GL K +RKQ KERK
Sbjct: 58 ANCIFVFKFRTHFGGGKSTGFGLIYDNLDAAKKYEPKYRLIRNGLATKVEKSRKQMKERK 117
Query: 126 NRMKKVRG 103
NR KK+RG
Sbjct: 118 NRAKKIRG 125
>06_03_0440 +
20815528-20815653,20815742-20815912,20816501-20816584,
20818831-20818917,20819044-20819076
Length = 166
Score = 87.8 bits (208), Expect = 4e-18
Identities = 40/64 (62%), Positives = 53/64 (82%), Gaps = 1/64 (1%)
Frame = -3
Query: 443 TIRTRKLMTNRLLARKQMVCDVLHPGKPAVSKTEIREKLAKMYKV-TPDVVFVFGFKTNF 267
T+RTRK MTNRLL+RKQ V +VLHPG+ VSK +++EKLAK+Y+V + +FVF F+T+F
Sbjct: 11 TLRTRKFMTNRLLSRKQFVLEVLHPGRANVSKADLKEKLAKLYEVKDSNCIFVFKFRTHF 70
Query: 266 GGGK 255
GGGK
Sbjct: 71 GGGK 74
Score = 46.8 bits (106), Expect(2) = 1e-10
Identities = 21/42 (50%), Positives = 27/42 (64%)
Frame = -2
Query: 306 SRCSVRIRFQDKLRRWQATGFALIYDTLDLAKKFEPKHRLAR 181
S C +F+ ++TGF LIYD LD AKK+EPK+RL R
Sbjct: 58 SNCIFVFKFRTHFGGGKSTGFGLIYDNLDAAKKYEPKYRLIR 99
Score = 35.9 bits (79), Expect(2) = 1e-10
Identities = 16/26 (61%), Positives = 19/26 (73%)
Frame = -2
Query: 180 HGLYEKKRPTRKQRKERKNRMKKVRG 103
+GL K +RKQ KERKNR KK+RG
Sbjct: 128 NGLATKVEKSRKQMKERKNRAKKIRG 153
>02_02_0153 -
7258002-7258034,7258137-7258223,7258991-7259161,
7259261-7259386
Length = 138
Score = 87.8 bits (208), Expect = 4e-18
Identities = 40/64 (62%), Positives = 53/64 (82%), Gaps = 1/64 (1%)
Frame = -3
Query: 443 TIRTRKLMTNRLLARKQMVCDVLHPGKPAVSKTEIREKLAKMYKV-TPDVVFVFGFKTNF 267
T+RTRK MTNRLL+RKQ V +VLHPG+ VSK +++EKLAK+Y+V + +FVF F+T+F
Sbjct: 11 TLRTRKFMTNRLLSRKQFVLEVLHPGRANVSKADLKEKLAKLYEVKDSNCIFVFKFRTHF 70
Query: 266 GGGK 255
GGGK
Sbjct: 71 GGGK 74
Score = 78.6 bits (185), Expect = 2e-15
Identities = 37/68 (54%), Positives = 46/68 (67%)
Frame = -2
Query: 306 SRCSVRIRFQDKLRRWQATGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERK 127
S C +F+ ++TGF LIYD LD AKK+EPK+RL R+GL K +RKQ KERK
Sbjct: 58 SNCIFVFKFRTHFGGGKSTGFGLIYDNLDAAKKYEPKYRLIRNGLATKVEKSRKQMKERK 117
Query: 126 NRMKKVRG 103
NR KK+RG
Sbjct: 118 NRAKKIRG 125
>01_01_0502 -
3688940-3689149,3689180-3689251,3690028-3690064,
3691224-3691705
Length = 266
Score = 30.7 bits (66), Expect = 0.57
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = -1
Query: 268 SEVASNWIRFDLRHTRSGQEVRAQAQVSPPRPVREEEAHA 149
+ V + W R +R + G E AQ+ PPRPV + +HA
Sbjct: 149 AHVLAIWSRL-VRTSEHGDEQLTGAQLRPPRPVEADASHA 187
>12_02_0342 -
17742326-17742356,17742503-17742621,17743148-17743175,
17743971-17744063,17744517-17744628,17745593-17745729,
17745924-17745958,17746938-17747000
Length = 205
Score = 29.9 bits (64), Expect = 1.0
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +1
Query: 232 VDQSESSCLPPPKFVLKPNTNTTSGVT 312
++Q+ SCLPP L+P T+T S T
Sbjct: 50 MEQASESCLPPLPISLEPKTSTASKAT 76
>02_05_0473 +
29319824-29322511,29322659-29322820,29324133-29324249,
29324360-29324469,29324504-29324540,29324696-29324862,
29325002-29325089,29325163-29325270
Length = 1158
Score = 28.3 bits (60), Expect = 3.1
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = -3
Query: 383 DVLHPGKPAVSKTEIREKLAKMYKVTPDVVFVFGFKTNFGGGKQLD 246
D+L + KT +R L Y + PD +FV K G Q+D
Sbjct: 724 DILSIARSVCCKTSLRAALKAKYGILPDNIFVKAAKLCSDVGIQID 769
>07_01_1045 +
9131301-9131483,9131652-9131717,9132433-9132513,
9133414-9133482,9133581-9133643,9133933-9133941,
9134259-9134341,9134415-9134517
Length = 218
Score = 27.5 bits (58), Expect = 5.3
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +1
Query: 190 PVLGLELLGQIECVVDQSESSCLPPPKFVLKP 285
PV G +L I+C + E +P P+F L P
Sbjct: 181 PVTGRDLSRAIDCALSGQELPFVPKPRFPLVP 212
>04_04_1214 -
31798271-31799134,31799218-31799301,31799469-31799614,
31799658-31799739
Length = 391
Score = 27.5 bits (58), Expect = 5.3
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -2
Query: 279 QDKLRRWQATGFALIYDTLDLAKKFEPKHRL 187
+D + A GF L D L+ AK F+ KH+L
Sbjct: 119 EDAVVSMLAKGFVLGKDALERAKSFDEKHQL 149
>01_05_0740 - 24809951-24810394,24810622-24810700,24811651-24811809,
24812083-24812246,24812436-24812624,24813151-24813408,
24813463-24813951,24814062-24814262,24814368-24814639,
24814661-24814685,24814776-24814937,24815065-24815104,
24815244-24815353,24815812-24815898,24816013-24816507
Length = 1057
Score = 27.5 bits (58), Expect = 5.3
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = -2
Query: 177 GLYEKKRPTRKQRKERKNRMKK 112
G+YE++R R+Q KER+ + K
Sbjct: 999 GVYERERNMRQQEKERRKQQSK 1020
>12_02_0205 - 15506167-15507576
Length = 469
Score = 26.6 bits (56), Expect = 9.3
Identities = 9/26 (34%), Positives = 14/26 (53%)
Frame = +1
Query: 223 ECVVDQSESSCLPPPKFVLKPNTNTT 300
+C + + CLPPP +PN + T
Sbjct: 116 QCAPCAAAAGCLPPPATAFRPNGSAT 141
>11_04_0350 - 16658497-16659015
Length = 172
Score = 26.6 bits (56), Expect = 9.3
Identities = 10/23 (43%), Positives = 18/23 (78%)
Frame = -2
Query: 168 EKKRPTRKQRKERKNRMKKVRGT 100
+KK+ +K++K++K + KKVR T
Sbjct: 36 KKKKKKKKKKKKKKKKKKKVRYT 58
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,138,795
Number of Sequences: 37544
Number of extensions: 247558
Number of successful extensions: 815
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 787
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 808
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 883560296
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -