Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30545X
(454 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_18070| Best HMM Match : V-ATPase_G (HMM E-Value=4) 29 1.8
SB_44985| Best HMM Match : YhjQ (HMM E-Value=0.37) 29 1.8
SB_6351| Best HMM Match : IncA (HMM E-Value=0.13) 29 1.8
SB_51534| Best HMM Match : 7tm_1 (HMM E-Value=0) 28 3.1
SB_11523| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.1
SB_16395| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.2
SB_43681| Best HMM Match : MAM (HMM E-Value=2.5e-20) 27 7.3
SB_38155| Best HMM Match : DUF414 (HMM E-Value=4.4) 27 7.3
SB_37973| Best HMM Match : ABC_tran (HMM E-Value=0) 27 7.3
SB_37483| Best HMM Match : Drf_FH1 (HMM E-Value=6.6) 27 7.3
SB_899| Best HMM Match : Alpha_L_fucos (HMM E-Value=0) 27 7.3
SB_59423| Best HMM Match : Insulin (HMM E-Value=7.7) 27 9.6
SB_45510| Best HMM Match : DUF1279 (HMM E-Value=1.2) 27 9.6
SB_26060| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.6
SB_22216| Best HMM Match : PGAMP (HMM E-Value=4) 27 9.6
SB_54309| Best HMM Match : SH2 (HMM E-Value=5.1e-17) 27 9.6
SB_42837| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.6
SB_11898| Best HMM Match : DMP1 (HMM E-Value=1.6) 27 9.6
>SB_18070| Best HMM Match : V-ATPase_G (HMM E-Value=4)
Length = 166
Score = 29.1 bits (62), Expect = 1.8
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = -2
Query: 198 KHRLARHGLYEKKRPTRKQRKERKNRMKKVR 106
+H LA H +++RP+ R+ K R++K+R
Sbjct: 79 RHGLASHDKKKRERPSLVARERMKKRLRKIR 109
>SB_44985| Best HMM Match : YhjQ (HMM E-Value=0.37)
Length = 1376
Score = 29.1 bits (62), Expect = 1.8
Identities = 17/39 (43%), Positives = 21/39 (53%)
Frame = -2
Query: 225 LDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKV 109
LDL KHR RH EKK K RK +KN M+++
Sbjct: 1000 LDLLLAHATKHRGRRHRS-EKKEKANKARKCQKNYMRRL 1037
>SB_6351| Best HMM Match : IncA (HMM E-Value=0.13)
Length = 417
Score = 29.1 bits (62), Expect = 1.8
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = -2
Query: 198 KHRLARHGLYEKKRPTRKQRKERKNRMKKVR 106
+H LA H +++RP+ R+ K R++K+R
Sbjct: 378 RHGLASHDKKKRERPSLVARERMKKRLRKIR 408
>SB_51534| Best HMM Match : 7tm_1 (HMM E-Value=0)
Length = 795
Score = 28.3 bits (60), Expect = 3.1
Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Frame = +1
Query: 226 CVVDQSESSCLPPPKF-VLKPNTNTTSGVTLYILASFSRISVLLTAGFPGCNTSQTICLR 402
C D + S PPPKF + ++T V L +L F + V++ T C
Sbjct: 6 CCNDSNSSINSPPPKFSITTIAVSSTFVVILLLLTVFGNVLVIMAFKVFHRMRQVTNCFV 65
Query: 403 ANNLLVINLRVRIVAVP 453
A +L V ++ V + A+P
Sbjct: 66 A-SLAVTDILVAVFAMP 81
>SB_11523| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 28.3 bits (60), Expect = 3.1
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = +3
Query: 297 YIGSNLVHFGELLTDLGLADGWFSWM*YIANHLLARQQSVGH*LASANS 443
+I N +F + DLG+A + + + +H L R Q+VGH A S
Sbjct: 289 FIDFNDFYFSNRVVDLGIALAYIMMLPQVNSH-LTRPQAVGHMFAGYQS 336
>SB_16395| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 61
Score = 27.9 bits (59), Expect = 4.2
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = -2
Query: 201 PKHRLARHGLYEKKRPTRKQRKERKNRMKK 112
P+ L H L ++ R R+QR ER++R+K+
Sbjct: 21 PQQILFTHRLEQRYRVERRQRLERRHRVKR 50
>SB_43681| Best HMM Match : MAM (HMM E-Value=2.5e-20)
Length = 1468
Score = 27.1 bits (57), Expect = 7.3
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Frame = +1
Query: 271 FVLKPNTNTTSGVTL---YILASFSRISVLLTAGFPGCNTSQT 390
F+ PN ++ TL ++ S R+ V+ + G PGC S T
Sbjct: 904 FISIPNITISNTFTLSWWMLVQSVQRVYVMTSVGNPGCGASPT 946
>SB_38155| Best HMM Match : DUF414 (HMM E-Value=4.4)
Length = 361
Score = 27.1 bits (57), Expect = 7.3
Identities = 12/45 (26%), Positives = 23/45 (51%)
Frame = -1
Query: 286 SVSRQTSEVASNWIRFDLRHTRSGQEVRAQAQVSPPRPVREEEAH 152
+ S + + A + I+ +H R VR +QVS P++++ H
Sbjct: 256 NTSVEKLQAAHDKIKVKPKHRRPPSRVRTSSQVSTEPPIKKDPTH 300
>SB_37973| Best HMM Match : ABC_tran (HMM E-Value=0)
Length = 3369
Score = 27.1 bits (57), Expect = 7.3
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = -3
Query: 440 IRTRKLMTNRLLARKQMVCDVL-HPGKPAVSKTEIREKLAK 321
+++R L TN L+ R + V HP +P S+++ RE+ K
Sbjct: 418 LKSRYLSTNLLILRAEHASTVDGHPREPKASRSQARERGGK 458
>SB_37483| Best HMM Match : Drf_FH1 (HMM E-Value=6.6)
Length = 237
Score = 27.1 bits (57), Expect = 7.3
Identities = 12/34 (35%), Positives = 22/34 (64%)
Frame = +1
Query: 262 PPKFVLKPNTNTTSGVTLYILASFSRISVLLTAG 363
PP+ P+TN ++G T+ ++A+ S + +TAG
Sbjct: 170 PPQTPPSPSTNASAGGTVTVMATPSPLLTDITAG 203
>SB_899| Best HMM Match : Alpha_L_fucos (HMM E-Value=0)
Length = 1127
Score = 27.1 bits (57), Expect = 7.3
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = -2
Query: 210 KFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKVR 106
KFEPKH+ + KKR +RK+ E + + + +R
Sbjct: 1060 KFEPKHK-KKGRSSSKKRHSRKKGHEEQQKKETIR 1093
>SB_59423| Best HMM Match : Insulin (HMM E-Value=7.7)
Length = 123
Score = 26.6 bits (56), Expect = 9.6
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +1
Query: 334 SRISVLLTAGFPGCNTSQTICLRANNL 414
S + + T G G N +ICLRA++L
Sbjct: 29 SSLHLAQTCGISGANVEYSICLRASSL 55
>SB_45510| Best HMM Match : DUF1279 (HMM E-Value=1.2)
Length = 148
Score = 26.6 bits (56), Expect = 9.6
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = -3
Query: 443 TIRTRKLMTNRLLARKQMVCDVLHPGKPAVSKTEIREKLAKMYK 312
T RTR +LA K D H G A S+ ++E++ ++K
Sbjct: 7 TRRTRSRTDAAILAVKSFRLDPSHTGSVAKSEKPLKERIKAIFK 50
>SB_26060| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2671
Score = 26.6 bits (56), Expect = 9.6
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +3
Query: 183 GLTCAWARTSWPDRVCRRSKRIQLLATSEVCLETEYEHY 299
GL C W R S + R+SKRIQ VC + +E++
Sbjct: 1768 GLHC-WVRKSRLPKGRRKSKRIQCGRLRSVCTPSVWENH 1805
>SB_22216| Best HMM Match : PGAMP (HMM E-Value=4)
Length = 132
Score = 26.6 bits (56), Expect = 9.6
Identities = 13/36 (36%), Positives = 16/36 (44%)
Frame = +3
Query: 138 YAVCAWASSSRTGRGGLTCAWARTSWPDRVCRRSKR 245
Y CA S G+ C +A + PD RRS R
Sbjct: 62 YGTCAMPDSGIPPPPGVLCRYAPCAMPDPKMRRSNR 97
>SB_54309| Best HMM Match : SH2 (HMM E-Value=5.1e-17)
Length = 1249
Score = 26.6 bits (56), Expect = 9.6
Identities = 11/35 (31%), Positives = 22/35 (62%)
Frame = -2
Query: 213 KKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKV 109
+K + + RLA E+KR ++RKE++ + K++
Sbjct: 202 RKLQEEARLAAQRALEEKRKLEEERKEQERKEKEL 236
>SB_42837| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 131
Score = 26.6 bits (56), Expect = 9.6
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = -2
Query: 168 EKKRPTRKQRKERKNRMKK 112
EKKR +KQ+K++K + KK
Sbjct: 16 EKKRKKKKQKKKKKKKKKK 34
>SB_11898| Best HMM Match : DMP1 (HMM E-Value=1.6)
Length = 1705
Score = 26.6 bits (56), Expect = 9.6
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +3
Query: 183 GLTCAWARTSWPDRVCRRSKRIQLLATSEVCLETEYEHY 299
GL C W R S + R+SKRIQ VC + +E++
Sbjct: 80 GLHC-WVRKSRLPKGRRKSKRIQCGRLRSVCTPSVWENH 117
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,704,109
Number of Sequences: 59808
Number of extensions: 274813
Number of successful extensions: 938
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 847
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 932
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 908427626
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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