Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30545X
         (454 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g04920.1 68416.m00534 40S ribosomal protein S24 (RPS24A) simi...    95   2e-20
At5g28060.1 68418.m03382 40S ribosomal protein S24 (RPS24B) 40S ...    92   1e-19
At5g52700.1 68418.m06542 heavy-metal-associated domain-containin...    30   0.84 
At5g26850.1 68418.m03203 expressed protein                             28   3.4  
At5g18220.1 68418.m02138 glycosyl hydrolase family 17 protein si...    27   5.9  
At3g01610.1 68416.m00092 AAA-type ATPase family protein contains...    27   7.8  

>At3g04920.1 68416.m00534 40S ribosomal protein S24 (RPS24A) similar
           to ribosomal protein S19 GB:445612 [Solanum tuberosum]
           and similar to ribosomal protein S24 GB:4506703 [Homo
           sapiens]
          Length = 133

 Score = 95.1 bits (226), Expect = 2e-20
 Identities = 44/64 (68%), Positives = 54/64 (84%), Gaps = 1/64 (1%)
 Frame = -3

Query: 443 TIRTRKLMTNRLLARKQMVCDVLHPGKPAVSKTEIREKLAKMYKV-TPDVVFVFGFKTNF 267
           TIRTRK MTNRLL+RKQ V DVLHPG+  VSK E++EKLA+MY+V  P+ +FVF F+T+F
Sbjct: 7   TIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVFKFRTHF 66

Query: 266 GGGK 255
           GGGK
Sbjct: 67  GGGK 70



 Score = 72.5 bits (170), Expect = 1e-13
 Identities = 34/61 (55%), Positives = 45/61 (73%)
 Frame = -2

Query: 285 RFQDKLRRWQATGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKVR 106
           +F+      +++GF LIYDT++ AKKFEPK+RL R+GL  K   +RKQ KERKNR KK+R
Sbjct: 61  KFRTHFGGGKSSGFGLIYDTVESAKKFEPKYRLIRNGLDTKIEKSRKQIKERKNRAKKIR 120

Query: 105 G 103
           G
Sbjct: 121 G 121


>At5g28060.1 68418.m03382 40S ribosomal protein S24 (RPS24B) 40S
           ribosomal protein S19, Cyanophora paradoxa,
           EMBL:CPA245654
          Length = 133

 Score = 92.3 bits (219), Expect = 1e-19
 Identities = 43/64 (67%), Positives = 52/64 (81%), Gaps = 1/64 (1%)
 Frame = -3

Query: 443 TIRTRKLMTNRLLARKQMVCDVLHPGKPAVSKTEIREKLAKMYKV-TPDVVFVFGFKTNF 267
           TIRTR  MTNRLLARKQ V DVLHPG+  VSK E++EKLA+MY+V  P+ +F F F+T+F
Sbjct: 7   TIRTRNFMTNRLLARKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFCFKFRTHF 66

Query: 266 GGGK 255
           GGGK
Sbjct: 67  GGGK 70



 Score = 70.9 bits (166), Expect = 4e-13
 Identities = 33/61 (54%), Positives = 45/61 (73%)
 Frame = -2

Query: 285 RFQDKLRRWQATGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKVR 106
           +F+      +++G+ LIYDT++ AKKFEPK+RL R+GL  K   +RKQ KERKNR KK+R
Sbjct: 61  KFRTHFGGGKSSGYGLIYDTVENAKKFEPKYRLIRNGLDTKIEKSRKQIKERKNRAKKIR 120

Query: 105 G 103
           G
Sbjct: 121 G 121


>At5g52700.1 68418.m06542 heavy-metal-associated domain-containing
           protein   contains Pfam profile PF00403:
           Heavy-metal-associated domain
          Length = 370

 Score = 29.9 bits (64), Expect = 0.84
 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
 Frame = -1

Query: 274 QTSEV-ASNWIRFDLRHTRSGQEVRAQAQVSPPRPVR-EEEAHAQTA*RT*EQNEEGPRY 101
           QT  + +SN   F++++  S   V A+ +V PP PVR     +A    +   Q  E P Y
Sbjct: 194 QTPNIGSSNGTNFNMKNALSSFRVPARVRVPPPPPVRPASPVYAAGRGKKFNQGNEFPTY 253

Query: 100 QE 95
           ++
Sbjct: 254 KQ 255


>At5g26850.1 68418.m03203 expressed protein
          Length = 919

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = -3

Query: 422 MTNRLLARKQMVCDVLHPGKPAVSKTEIRE-KLAKMYKVTPDVVFVFGFKTN 270
           M +++     ++ D++    P +SK E  + K+  + + TPD  F+FG + N
Sbjct: 702 MRSKVELSNTIITDIVAKNLPKLSKLEEADVKMQILEQFTPDDAFMFGSRPN 753


>At5g18220.1 68418.m02138 glycosyl hydrolase family 17 protein
           similar to elicitor inducible chitinase Nt-SubE76
           GI:11071974 from [Nicotiana tabacum]
          Length = 488

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = -2

Query: 429 QVNDQQIVGAQADGLRCITSRKTSRQQDRDP*EARQNVQGYS 304
           QV +Q+      +GL  IT+R  SR+Q   P +      G+S
Sbjct: 426 QVQNQKAEACDFEGLAIITTRNISREQCNFPIQIGDPTSGHS 467


>At3g01610.1 68416.m00092 AAA-type ATPase family protein contains
           Pfam domain, PF00004: ATPase, AAA family ('A'TPases
           'A'ssociated with diverse cellular 'A'ctivities)
          Length = 820

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -3

Query: 368 GKPAVSKTEIREKLAKMYKVTPDVVFV 288
           G    S+  IRE  +K Y+  P +VF+
Sbjct: 306 GVSGASEENIRELFSKAYRTAPSIVFI 332


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,445,302
Number of Sequences: 28952
Number of extensions: 190036
Number of successful extensions: 603
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 581
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 599
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 742437000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)