Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30544
         (594 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF222296-1|ABN79656.2|  403|Tribolium castaneum arginine vasopre...    22   3.4  
AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.           21   5.9  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    21   5.9  

>EF222296-1|ABN79656.2|  403|Tribolium castaneum arginine
           vasopressin receptor protein.
          Length = 403

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +3

Query: 369 LVTPVTSSNW*NRQLSKDNSASNGSGD 449
           L+   T+S+   R  +  NSASN SGD
Sbjct: 330 LLRHYTASSKNYRSATGGNSASNSSGD 356


>AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.
          Length = 253

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 10/29 (34%), Positives = 13/29 (44%)
 Frame = +3

Query: 192 RCQLNHELRCSSPVHQPSEEALRNWRRHN 278
           RC+   +     P  QP+  A RN R  N
Sbjct: 68  RCKRKIQFMPYGPQQQPASVARRNARERN 96


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 9/37 (24%), Positives = 18/37 (48%)
 Frame = +3

Query: 405 RQLSKDNSASNGSGDFLAALHTQTNMTVVVANGNNAL 515
           ++  K NS +NGS D +      ++    + NG+  +
Sbjct: 275 KEKDKPNSTTNGSPDVIKVEPELSDSEKTLCNGSKGI 311


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,599
Number of Sequences: 336
Number of extensions: 3421
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14935063
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)