BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdV30544 (594 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces ... 153 1e-38 SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S... 28 1.2 SPCC4G3.09c |gyp3||GTPase activating protein Gyp3|Schizosaccharo... 26 3.6 SPBC4B4.09 |usp105|prp39|U1 snRNP-associated protein Usp105|Schi... 26 4.8 SPAC140.01 |sdh2||succinate dehydrogenase |Schizosaccharomyces p... 26 4.8 SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyce... 25 6.3 SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 8.3 SPBC3D6.16 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 8.3 >SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces pombe|chr 3|||Manual Length = 253 Score = 153 bits (372), Expect = 1e-38 Identities = 64/92 (69%), Positives = 80/92 (86%) Frame = -2 Query: 518 FQGIVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIGKPHTVPCK 339 F+ V IGD++GH+GLG+KC+KEVATAIRGAII+ KLS++P+RRGYWG +G PHTVP K Sbjct: 97 FKAFVVIGDSDGHVGLGIKCAKEVATAIRGAIIMGKLSIMPIRRGYWGTALGDPHTVPVK 156 Query: 338 VTGKCGSVTVRLIPAPRGTGIVSAPVPKSFFR 243 V+GKCGSVTVRL+PAPRG G+V+APV K F + Sbjct: 157 VSGKCGSVTVRLVPAPRGAGLVAAPVTKRFLQ 188 Score = 58.8 bits (136), Expect = 6e-10 Identities = 25/56 (44%), Positives = 34/56 (60%) Frame = -1 Query: 249 LQMAGVQDCYTSARGSTGTLGNFXXXXXXXXXXXXXYLTPDLWRDIPLTKSPYSEF 82 LQ+AG++DCYT +RGST TLGNF LTP+LW + P ++P E+ Sbjct: 187 LQLAGIEDCYTQSRGSTKTLGNFVKAAFAAASLTYGILTPNLWAERPFGQTPIEEY 242 Score = 54.0 bits (124), Expect = 2e-08 Identities = 23/29 (79%), Positives = 27/29 (93%) Frame = -3 Query: 589 PSLNDEVLKIMPVQKQTRAGQRTRFKALL 503 P LNDEV+K++PVQKQTRAGQRTRFKA + Sbjct: 73 PRLNDEVMKVVPVQKQTRAGQRTRFKAFV 101 >SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |Schizosaccharomyces pombe|chr 1|||Manual Length = 971 Score = 27.9 bits (59), Expect = 1.2 Identities = 11/20 (55%), Positives = 16/20 (80%) Frame = -2 Query: 257 KSFFRWLVYRTATPQLVVQL 198 +S F+WL+ TATP+L+V L Sbjct: 69 RSVFQWLIALTATPRLLVLL 88 >SPCC4G3.09c |gyp3||GTPase activating protein Gyp3|Schizosaccharomyces pombe|chr 3|||Manual Length = 635 Score = 26.2 bits (55), Expect = 3.6 Identities = 15/41 (36%), Positives = 21/41 (51%) Frame = -3 Query: 592 GPSLNDEVLKIMPVQKQTRAGQRTRFKALLPLATTTVILVW 470 G +ND V K+ P+ T A + F +LP T T + VW Sbjct: 475 GIPVNDIVAKLPPITLVTAAWFMSAFVGILP--TETALRVW 513 >SPBC4B4.09 |usp105|prp39|U1 snRNP-associated protein Usp105|Schizosaccharomyces pombe|chr 2|||Manual Length = 612 Score = 25.8 bits (54), Expect = 4.8 Identities = 10/25 (40%), Positives = 14/25 (56%) Frame = +2 Query: 479 YDRCCRQWQQCLETCALSGTCLFLY 553 + R C +++CL TCAL F Y Sbjct: 298 FQRICHLYERCLITCALYDEFWFRY 322 >SPAC140.01 |sdh2||succinate dehydrogenase |Schizosaccharomyces pombe|chr 1|||Manual Length = 252 Score = 25.8 bits (54), Expect = 4.8 Identities = 10/29 (34%), Positives = 15/29 (51%) Frame = -1 Query: 363 KATHRPLQGHRQVWFCNSPADSCPSWYWN 277 +A L G + C + SCPS++WN Sbjct: 153 RADRAKLDGLYECILCACCSTSCPSYWWN 181 >SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyces pombe|chr 2|||Manual Length = 506 Score = 25.4 bits (53), Expect = 6.3 Identities = 9/26 (34%), Positives = 15/26 (57%) Frame = -1 Query: 324 WFCNSPADSCPSWYWNCVCASS*ELL 247 +FC+ + P+WY +C S E+L Sbjct: 190 FFCSRETNMPPTWYLYVLCTSEGEVL 215 >SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual Length = 536 Score = 25.0 bits (52), Expect = 8.3 Identities = 11/27 (40%), Positives = 19/27 (70%) Frame = +3 Query: 357 WLSDLVTPVTSSNW*NRQLSKDNSASN 437 ++S++VTP T++NW N S +S S+ Sbjct: 192 YVSEVVTPTTTNNW-NSSSSFTSSTSS 217 >SPBC3D6.16 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual Length = 95 Score = 25.0 bits (52), Expect = 8.3 Identities = 10/15 (66%), Positives = 12/15 (80%) Frame = -2 Query: 158 LPRHMPTSLLTCGGT 114 LPR +PTSLLT G+ Sbjct: 27 LPRSIPTSLLTAAGS 41 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,535,460 Number of Sequences: 5004 Number of extensions: 55844 Number of successful extensions: 162 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 157 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 162 length of database: 2,362,478 effective HSP length: 69 effective length of database: 2,017,202 effective search space used: 258201856 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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