Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30544
         (594 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces ...   153   1e-38
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S...    28   1.2  
SPCC4G3.09c |gyp3||GTPase activating protein Gyp3|Schizosaccharo...    26   3.6  
SPBC4B4.09 |usp105|prp39|U1 snRNP-associated protein Usp105|Schi...    26   4.8  
SPAC140.01 |sdh2||succinate dehydrogenase |Schizosaccharomyces p...    26   4.8  
SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyce...    25   6.3  
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   8.3  
SPBC3D6.16 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   8.3  

>SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 253

 Score =  153 bits (372), Expect = 1e-38
 Identities = 64/92 (69%), Positives = 80/92 (86%)
 Frame = -2

Query: 518 FQGIVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIGKPHTVPCK 339
           F+  V IGD++GH+GLG+KC+KEVATAIRGAII+ KLS++P+RRGYWG  +G PHTVP K
Sbjct: 97  FKAFVVIGDSDGHVGLGIKCAKEVATAIRGAIIMGKLSIMPIRRGYWGTALGDPHTVPVK 156

Query: 338 VTGKCGSVTVRLIPAPRGTGIVSAPVPKSFFR 243
           V+GKCGSVTVRL+PAPRG G+V+APV K F +
Sbjct: 157 VSGKCGSVTVRLVPAPRGAGLVAAPVTKRFLQ 188



 Score = 58.8 bits (136), Expect = 6e-10
 Identities = 25/56 (44%), Positives = 34/56 (60%)
 Frame = -1

Query: 249 LQMAGVQDCYTSARGSTGTLGNFXXXXXXXXXXXXXYLTPDLWRDIPLTKSPYSEF 82
           LQ+AG++DCYT +RGST TLGNF              LTP+LW + P  ++P  E+
Sbjct: 187 LQLAGIEDCYTQSRGSTKTLGNFVKAAFAAASLTYGILTPNLWAERPFGQTPIEEY 242



 Score = 54.0 bits (124), Expect = 2e-08
 Identities = 23/29 (79%), Positives = 27/29 (93%)
 Frame = -3

Query: 589 PSLNDEVLKIMPVQKQTRAGQRTRFKALL 503
           P LNDEV+K++PVQKQTRAGQRTRFKA +
Sbjct: 73  PRLNDEVMKVVPVQKQTRAGQRTRFKAFV 101


>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 971

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = -2

Query: 257 KSFFRWLVYRTATPQLVVQL 198
           +S F+WL+  TATP+L+V L
Sbjct: 69  RSVFQWLIALTATPRLLVLL 88


>SPCC4G3.09c |gyp3||GTPase activating protein
           Gyp3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 635

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = -3

Query: 592 GPSLNDEVLKIMPVQKQTRAGQRTRFKALLPLATTTVILVW 470
           G  +ND V K+ P+   T A   + F  +LP  T T + VW
Sbjct: 475 GIPVNDIVAKLPPITLVTAAWFMSAFVGILP--TETALRVW 513


>SPBC4B4.09 |usp105|prp39|U1 snRNP-associated protein
           Usp105|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 612

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +2

Query: 479 YDRCCRQWQQCLETCALSGTCLFLY 553
           + R C  +++CL TCAL     F Y
Sbjct: 298 FQRICHLYERCLITCALYDEFWFRY 322


>SPAC140.01 |sdh2||succinate dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 252

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -1

Query: 363 KATHRPLQGHRQVWFCNSPADSCPSWYWN 277
           +A    L G  +   C   + SCPS++WN
Sbjct: 153 RADRAKLDGLYECILCACCSTSCPSYWWN 181


>SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 506

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -1

Query: 324 WFCNSPADSCPSWYWNCVCASS*ELL 247
           +FC+   +  P+WY   +C S  E+L
Sbjct: 190 FFCSRETNMPPTWYLYVLCTSEGEVL 215


>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 536

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = +3

Query: 357 WLSDLVTPVTSSNW*NRQLSKDNSASN 437
           ++S++VTP T++NW N   S  +S S+
Sbjct: 192 YVSEVVTPTTTNNW-NSSSSFTSSTSS 217


>SPBC3D6.16 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 95

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -2

Query: 158 LPRHMPTSLLTCGGT 114
           LPR +PTSLLT  G+
Sbjct: 27  LPRSIPTSLLTAAGS 41


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,535,460
Number of Sequences: 5004
Number of extensions: 55844
Number of successful extensions: 162
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)