Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30544
(594 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_4413| Best HMM Match : No HMM Matches (HMM E-Value=.) 177 5e-45
SB_41690| Best HMM Match : DSL (HMM E-Value=0) 33 0.23
SB_54594| Best HMM Match : Ank (HMM E-Value=4.4e-11) 32 0.30
SB_8978| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_38056| Best HMM Match : OAD_gamma (HMM E-Value=8) 29 2.1
SB_6733| Best HMM Match : 7tm_1 (HMM E-Value=9.6e-36) 29 2.8
SB_11257| Best HMM Match : GCC2_GCC3 (HMM E-Value=2.7e-11) 29 3.7
SB_52295| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.9
SB_24946| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.9
SB_58675| Best HMM Match : RVT_1 (HMM E-Value=0) 28 6.5
SB_36678| Best HMM Match : Aa_trans (HMM E-Value=1.8e-07) 27 8.6
SB_29742| Best HMM Match : zf-CCHC (HMM E-Value=3.4e-05) 27 8.6
>SB_4413| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 252
Score = 177 bits (431), Expect = 5e-45
Identities = 80/92 (86%), Positives = 85/92 (92%)
Frame = -2
Query: 518 FQGIVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIGKPHTVPCK 339
F+ VAIGD+NGH+GLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNKIGKPHTVPCK
Sbjct: 72 FKAFVAIGDSNGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGKPHTVPCK 131
Query: 338 VTGKCGSVTVRLIPAPRGTGIVSAPVPKSFFR 243
VTGKCGS VRLIPAPRGTGIVSAPVPK +
Sbjct: 132 VTGKCGSTRVRLIPAPRGTGIVSAPVPKKLLQ 163
Score = 70.9 bits (166), Expect = 7e-13
Identities = 31/58 (53%), Positives = 38/58 (65%)
Frame = -1
Query: 255 ELLQMAGVQDCYTSARGSTGTLGNFXXXXXXXXXXXXXYLTPDLWRDIPLTKSPYSEF 82
+LLQMAG++DCYTS RG T TLGNF YLTPD+W++ TK+PY EF
Sbjct: 160 KLLQMAGIEDCYTSTRGQTATLGNFAKATFAAISETYAYLTPDMWKETVFTKTPYQEF 217
Score = 54.8 bits (126), Expect = 5e-08
Identities = 25/32 (78%), Positives = 28/32 (87%)
Frame = -3
Query: 592 GPSLNDEVLKIMPVQKQTRAGQRTRFKALLPL 497
G +L DEVLKIMPVQKQTRAGQRTRFKA + +
Sbjct: 47 GAALKDEVLKIMPVQKQTRAGQRTRFKAFVAI 78
>SB_41690| Best HMM Match : DSL (HMM E-Value=0)
Length = 2798
Score = 32.7 bits (71), Expect = 0.23
Identities = 30/115 (26%), Positives = 43/115 (37%), Gaps = 7/115 (6%)
Frame = -1
Query: 504 CHWRQQRSYWFGCEVQQGSRHCHSRRYY-PC*VVCFTSSKRLLG*QD------RKATHRP 346
C R + F C GS+ CH Y C + C + G D RK H
Sbjct: 1111 CTPRNDSTGHFSCNETTGSKDCHDGWYGGTCSIYCLPHNGSS-GHYDCDASSGRKTCHVD 1169
Query: 345 LQGHRQVWFCNSPADSCPSWYWNCVCASS*ELLQMAGVQDCYTSARGSTGTLGNF 181
G FC+ P DS +Y N + G ++C T + S G+ G++
Sbjct: 1170 WYGINCTVFCSKPRDSKDHYYCNVTNGEKVCTEDLYG-RNCTTYCKSSNGSDGHY 1223
>SB_54594| Best HMM Match : Ank (HMM E-Value=4.4e-11)
Length = 733
Score = 32.3 bits (70), Expect = 0.30
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Frame = -2
Query: 500 IGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLP-VRRGYWGNKIGKPHTVPCKVTGKC 324
IGD+ G + V+ +K + G++ L+ P +RRG G++ KPH+ P ++ +
Sbjct: 137 IGDSGGIDTMDVR-NKATGSVAWGSVTKRPLTSTPDIRRGQTGSEFRKPHSEPRFMSARF 195
Query: 323 GS 318
GS
Sbjct: 196 GS 197
>SB_8978| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 217
Score = 29.9 bits (64), Expect = 1.6
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = +3
Query: 462 LHTQTNMTVVVANGNNALKRVRCPARVCFCTGMIF 566
L+T +TV+++N NAL +RC C+C M+F
Sbjct: 124 LYTAFTLTVLLSNLTNALYDLRCK---CYCAEMMF 155
>SB_38056| Best HMM Match : OAD_gamma (HMM E-Value=8)
Length = 176
Score = 29.5 bits (63), Expect = 2.1
Identities = 17/59 (28%), Positives = 27/59 (45%)
Frame = -2
Query: 305 LIPAPRGTGIVSAPVPKSFFRWLVYRTATPQLVVQLAPWEILLKPHMLPLPRHMPTSLL 129
++P PR G V + F + R TP VV A E +L + P+ +H+ S +
Sbjct: 101 IVPDPRDDGKAVERVFQKVFYYPARRYPTPDAVVPRATMESILPALLGPIVKHLAKSAI 159
>SB_6733| Best HMM Match : 7tm_1 (HMM E-Value=9.6e-36)
Length = 398
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/39 (35%), Positives = 15/39 (38%), Gaps = 1/39 (2%)
Frame = +2
Query: 437 WQWRLPCCTSHPNQYDRCCRQWQ-QCLETCALSGTCLFL 550
W W + C S N Y C R CL G CL L
Sbjct: 259 WVWSISMCNSAVNPYIYCARSISVACLSALQRHGECLAL 297
>SB_11257| Best HMM Match : GCC2_GCC3 (HMM E-Value=2.7e-11)
Length = 3810
Score = 28.7 bits (61), Expect = 3.7
Identities = 16/42 (38%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Frame = -2
Query: 401 LPVRRGYWGNKIG--KPHTVPCKVTGKCGSVTVRLIPAPRGT 282
LP GYW N G P PC V C + + P P GT
Sbjct: 3355 LPCPAGYWCNIKGLADPSISPCPVGHYCLNAIDKPTPCPNGT 3396
>SB_52295| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1325
Score = 28.3 bits (60), Expect = 4.9
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = -2
Query: 302 IPAPRGTGIVSAPVPKSFFRWLVYRTATPQLVVQLA 195
+P+P I A V + F +Y T+T QLVV LA
Sbjct: 1072 LPSPWYAAIYQARVMRQFCYQKIYDTSTGQLVVSLA 1107
>SB_24946| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 822
Score = 28.3 bits (60), Expect = 4.9
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = -2
Query: 407 SVLPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSA 267
+V RG+W + + H + C V +CG + L AP +VS+
Sbjct: 303 TVFTTYRGFWNYALVRKHWLKCVVNLQCG-IAKHLSQAPSNKLLVSS 348
>SB_58675| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 2353
Score = 27.9 bits (59), Expect = 6.5
Identities = 16/68 (23%), Positives = 29/68 (42%)
Frame = +3
Query: 303 QPDCYRTTLAGDLARDGVWLSDLVTPVTSSNW*NRQLSKDNSASNGSGDFLAALHTQTNM 482
+P C + + D++ + +W + V S +W N +N + D L N+
Sbjct: 626 RPKCKVSCMLNDISTEALWDTGAQISVLSKSWVN-----ENGLNTDLQDIETLLGRDRNL 680
Query: 483 TVVVANGN 506
V ANG+
Sbjct: 681 NVSAANGS 688
>SB_36678| Best HMM Match : Aa_trans (HMM E-Value=1.8e-07)
Length = 956
Score = 27.5 bits (58), Expect = 8.6
Identities = 11/20 (55%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
Frame = -1
Query: 345 LQGHRQVWFCNS-PADSCPS 289
LQ HR WFC S P +CP+
Sbjct: 87 LQSHRHPWFCVSCPTVTCPT 106
>SB_29742| Best HMM Match : zf-CCHC (HMM E-Value=3.4e-05)
Length = 1131
Score = 27.5 bits (58), Expect = 8.6
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = +3
Query: 240 PSEEALRNWRRHNSSTTRGRNQPD 311
PS LR RRH T GR +PD
Sbjct: 4 PSGRVLRRNRRHLLKTVEGRGEPD 27
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,247,051
Number of Sequences: 59808
Number of extensions: 477356
Number of successful extensions: 1377
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1376
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1427401750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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