Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30544
         (594 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42436-10|AAF99899.1|  272|Caenorhabditis elegans Ribosomal prot...   166   1e-41
U10401-4|AAN65289.1|  937|Caenorhabditis elegans Myc and mondo-l...    31   0.62 
U10401-3|AAA19059.2| 1009|Caenorhabditis elegans Myc and mondo-l...    31   0.62 
AF264757-1|AAK20949.1| 1009|Caenorhabditis elegans Mlx interacto...    31   0.62 
AF213473-1|AAL50027.1|  913|Caenorhabditis elegans basic helix-l...    31   0.62 
Z70681-3|CAA94579.2|  403|Caenorhabditis elegans Hypothetical pr...    29   3.3  
Z93396-8|CAB07710.2|  333|Caenorhabditis elegans Hypothetical pr...    28   5.8  
Z80220-3|CAB02306.1|  601|Caenorhabditis elegans Hypothetical pr...    28   5.8  
AL033509-2|CAA22060.2|  333|Caenorhabditis elegans Hypothetical ...    28   5.8  
Z50794-6|CAA90659.2|  388|Caenorhabditis elegans Hypothetical pr...    27   7.6  
U80453-10|AAN63453.1|  489|Caenorhabditis elegans Hypothetical p...    27   7.6  
U80453-9|AAT81206.1|  432|Caenorhabditis elegans Hypothetical pr...    27   7.6  
U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical pr...    27   7.6  
AC006794-1|AAK68504.1|  407|Caenorhabditis elegans Hypothetical ...    27   7.6  

>U42436-10|AAF99899.1|  272|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 2 protein.
          Length = 272

 Score =  166 bits (403), Expect = 1e-41
 Identities = 75/88 (85%), Positives = 81/88 (92%)
 Frame = -2

Query: 518 FQGIVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIGKPHTVPCK 339
           F+  VAIGD+ GH+GLGVKCSKEVATAIRGAI+ AKL+V+PVRRGYWGNKIG PHTVPCK
Sbjct: 120 FKAFVAIGDHAGHVGLGVKCSKEVATAIRGAIVAAKLAVVPVRRGYWGNKIGLPHTVPCK 179

Query: 338 VTGKCGSVTVRLIPAPRGTGIVSAPVPK 255
           VTGKC SV VRLIPAPRGTGIVSAPVPK
Sbjct: 180 VTGKCASVMVRLIPAPRGTGIVSAPVPK 207



 Score = 66.1 bits (154), Expect = 2e-11
 Identities = 30/55 (54%), Positives = 37/55 (67%)
 Frame = -1

Query: 255 ELLQMAGVQDCYTSARGSTGTLGNFXXXXXXXXXXXXXYLTPDLWRDIPLTKSPY 91
           +LL MAG++DCYT+A+GST TLGNF             YLTPDLW++  L KSPY
Sbjct: 208 KLLHMAGIEDCYTAAKGSTATLGNFAKATYAALQRTYSYLTPDLWKEEALEKSPY 262



 Score = 48.0 bits (109), Expect = 5e-06
 Identities = 22/30 (73%), Positives = 25/30 (83%)
 Frame = -3

Query: 586 SLNDEVLKIMPVQKQTRAGQRTRFKALLPL 497
           +L DEVLKI PVQKQT AGQRTRFKA + +
Sbjct: 97  NLKDEVLKISPVQKQTTAGQRTRFKAFVAI 126


>U10401-4|AAN65289.1|  937|Caenorhabditis elegans Myc and mondo-like
           protein 1, isoformb protein.
          Length = 937

 Score = 31.1 bits (67), Expect = 0.62
 Identities = 13/44 (29%), Positives = 25/44 (56%)
 Frame = +1

Query: 220 VAVLYTSHLKKLLGTGADTIPVPRGAGISRTVTEPHLPVTLQGT 351
           V++ + SH++++L      +P P  + +  T  +P+LP  LQ T
Sbjct: 475 VSLPHQSHVERILNNQPPLVPPPSRSNLLPTQNDPYLPQFLQST 518


>U10401-3|AAA19059.2| 1009|Caenorhabditis elegans Myc and mondo-like
           protein 1, isoforma protein.
          Length = 1009

 Score = 31.1 bits (67), Expect = 0.62
 Identities = 13/44 (29%), Positives = 25/44 (56%)
 Frame = +1

Query: 220 VAVLYTSHLKKLLGTGADTIPVPRGAGISRTVTEPHLPVTLQGT 351
           V++ + SH++++L      +P P  + +  T  +P+LP  LQ T
Sbjct: 475 VSLPHQSHVERILNNQPPLVPPPSRSNLLPTQNDPYLPQFLQST 518


>AF264757-1|AAK20949.1| 1009|Caenorhabditis elegans Mlx interactor
           protein.
          Length = 1009

 Score = 31.1 bits (67), Expect = 0.62
 Identities = 13/44 (29%), Positives = 25/44 (56%)
 Frame = +1

Query: 220 VAVLYTSHLKKLLGTGADTIPVPRGAGISRTVTEPHLPVTLQGT 351
           V++ + SH++++L      +P P  + +  T  +P+LP  LQ T
Sbjct: 475 VSLPHQSHVERILNNQPPLVPPPSRSNLLPTQNDPYLPQFLQST 518


>AF213473-1|AAL50027.1|  913|Caenorhabditis elegans basic
           helix-loop-helix leucinezipper WBSCR14-like protein
           protein.
          Length = 913

 Score = 31.1 bits (67), Expect = 0.62
 Identities = 13/44 (29%), Positives = 25/44 (56%)
 Frame = +1

Query: 220 VAVLYTSHLKKLLGTGADTIPVPRGAGISRTVTEPHLPVTLQGT 351
           V++ + SH++++L      +P P  + +  T  +P+LP  LQ T
Sbjct: 379 VSLPHQSHVERILNNQPPLVPPPSRSNLLPTQNDPYLPQFLQST 422


>Z70681-3|CAA94579.2|  403|Caenorhabditis elegans Hypothetical
           protein C30F2.3 protein.
          Length = 403

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +3

Query: 384 TSSNW*NRQLSKDNSASNGSG 446
           TS+NW N QL   NS + GSG
Sbjct: 309 TSTNWQNNQLGVSNSGAPGSG 329


>Z93396-8|CAB07710.2|  333|Caenorhabditis elegans Hypothetical
           protein ZC15.2 protein.
          Length = 333

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +2

Query: 500 WQQCLETCALSGTCLFLY 553
           W+ C+E C L  TC+  Y
Sbjct: 43  WESCVEECYLQNTCVLAY 60


>Z80220-3|CAB02306.1|  601|Caenorhabditis elegans Hypothetical
           protein T08G11.3 protein.
          Length = 601

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 19/69 (27%), Positives = 29/69 (42%)
 Frame = +3

Query: 267 RRHNSSTTRGRNQPDCYRTTLAGDLARDGVWLSDLVTPVTSSNW*NRQLSKDNSASNGSG 446
           R  N ++T   N P    +T   D  R     S L  P +SSN  +   SK ++ +    
Sbjct: 419 RNTNDTSTHSINAPFEGESTNHADFQRKQAEKSKLTRPHSSSNLLSPNASKFDATTTTRA 478

Query: 447 DFLAALHTQ 473
           DF+   H +
Sbjct: 479 DFIQKPHVR 487


>AL033509-2|CAA22060.2|  333|Caenorhabditis elegans Hypothetical
           protein ZC15.2 protein.
          Length = 333

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +2

Query: 500 WQQCLETCALSGTCLFLY 553
           W+ C+E C L  TC+  Y
Sbjct: 43  WESCVEECYLQNTCVLAY 60


>Z50794-6|CAA90659.2|  388|Caenorhabditis elegans Hypothetical
           protein F59F5.5 protein.
          Length = 388

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = -1

Query: 552 YRNKHVPDSAHVSRHCCHWRQQRSYW-FGCEVQQGSRHC 439
           Y+ KHV +  H + H C+    + Y  FG EV + S  C
Sbjct: 198 YQKKHVIERKHENLHYCYALMHKGYKPFGQEVFKKSSTC 236


>U80453-10|AAN63453.1|  489|Caenorhabditis elegans Hypothetical
           protein C23H3.9b protein.
          Length = 489

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 18/56 (32%), Positives = 25/56 (44%)
 Frame = +3

Query: 225 SPVHQPSEEALRNWRRHNSSTTRGRNQPDCYRTTLAGDLARDGVWLSDLVTPVTSS 392
           S  H  + E LR W  +N  +  G+N        LAG + R   W SD  T  T++
Sbjct: 13  SGTHGATTEQLRQWILNNRESLNGQND-------LAGSILRLFGWGSDKTTEATTT 61


>U80453-9|AAT81206.1|  432|Caenorhabditis elegans Hypothetical
           protein C23H3.9d protein.
          Length = 432

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 18/56 (32%), Positives = 25/56 (44%)
 Frame = +3

Query: 225 SPVHQPSEEALRNWRRHNSSTTRGRNQPDCYRTTLAGDLARDGVWLSDLVTPVTSS 392
           S  H  + E LR W  +N  +  G+N        LAG + R   W SD  T  T++
Sbjct: 13  SGTHGATTEQLRQWILNNRESLNGQND-------LAGSILRLFGWGSDKTTEATTT 61


>U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical protein
            C41A3.1 protein.
          Length = 7829

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 20/47 (42%), Positives = 27/47 (57%), Gaps = 9/47 (19%)
 Frame = -2

Query: 548  ETNTCRTAHTFQGIVAIGD---NNGHI----GLG--VKCSKEVATAI 435
            E N+ RTA++F+  +AIG    N GH     GL   VKC+K + T I
Sbjct: 5627 EMNSLRTAYSFKNKLAIGSCKANIGHAYAASGLAALVKCAKMLQTGI 5673


>AC006794-1|AAK68504.1|  407|Caenorhabditis elegans Hypothetical
           protein Y50D4A.3 protein.
          Length = 407

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = -2

Query: 464 KCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIGKPHTVPCKV 336
           +CS E  T   G     ++       GY+G+ +G  HT+ CK+
Sbjct: 284 ECSGEDPTNPGGPGESRRIKAFKWFNGYFGSPVGPEHTLSCKM 326


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,395,686
Number of Sequences: 27780
Number of extensions: 333696
Number of successful extensions: 1110
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 972
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1110
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1258229602
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)