Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30544
         (594 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.    23   2.3  
EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2 prot...    23   2.3  
AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2 prot...    23   2.3  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    23   3.0  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   3.9  
DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              22   5.2  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   6.9  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   6.9  

>X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.
          Length = 162

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -3

Query: 238 WCTGLLHLSSWFNWHLGKFC*SHICCHCQDIC 143
           WC G  + SS  N  LG+F  +  CC   D+C
Sbjct: 36  WC-GHGNKSSGPN-ELGRFKHTDACCRTHDMC 65


>EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -3

Query: 238 WCTGLLHLSSWFNWHLGKFC*SHICCHCQDIC 143
           WC G  + SS  N  LG+F  +  CC   D+C
Sbjct: 41  WC-GHGNKSSGPN-ELGRFKHTDACCRTHDMC 70


>AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -3

Query: 238 WCTGLLHLSSWFNWHLGKFC*SHICCHCQDIC 143
           WC G  + SS  N  LG+F  +  CC   D+C
Sbjct: 41  WC-GHGNKSSGPN-ELGRFKHTDACCRTHDMC 70


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +3

Query: 477 NMTVVVANGNNALKRVRC 530
           N  +++AN N+ +K  RC
Sbjct: 396 NFRILIANVNDLIKNTRC 413


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -3

Query: 487 TVILVWV*SAARKSPL 440
           T++LVW  SAA  SP+
Sbjct: 306 TILLVWAISAAIGSPI 321


>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 7/21 (33%), Positives = 11/21 (52%)
 Frame = -2

Query: 344 CKVTGKCGSVTVRLIPAPRGT 282
           C + G CG +   +   P+GT
Sbjct: 75  CPICGACGDIAHTVKYCPKGT 95


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = -2

Query: 266 PVPKSFFRWLVYRTATPQLVVQLAPWEILLKPHMLPLPRHMPTS 135
           PV K+F    ++      L VQ A   I+ K + LP+  H  +S
Sbjct: 451 PVLKNFPTRYIHEPWNAPLNVQRAAKCIIGKDYSLPMVNHSKSS 494


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 7/9 (77%), Positives = 9/9 (100%)
 Frame = -2

Query: 158 LPRHMPTSL 132
           LP+H+PTSL
Sbjct: 379 LPKHLPTSL 387


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,201
Number of Sequences: 438
Number of extensions: 4014
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17359926
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)