Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30544
(594 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C) 171 4e-43
At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) simila... 171 4e-43
At1g58983.1 68414.m06666 40S ribosomal protein S2, putative simi... 171 4e-43
At1g58684.1 68414.m06657 40S ribosomal protein S2, putative 171 4e-43
At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) simila... 171 4e-43
At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S ri... 170 5e-43
At2g33800.1 68415.m04147 ribosomal protein S5 family protein con... 48 5e-06
At5g53150.1 68418.m06607 DNAJ heat shock N-terminal domain-conta... 30 1.0
At5g56520.1 68418.m07054 expressed protein 28 4.1
At2g04050.1 68415.m00386 MATE efflux family protein similar to r... 28 5.4
At4g24560.1 68417.m03520 ubiquitin-specific protease 16, putativ... 27 9.4
At1g56650.1 68414.m06515 myb family transcription factor (MYB75)... 27 9.4
>At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C)
Length = 285
Score = 171 bits (415), Expect = 4e-43
Identities = 75/93 (80%), Positives = 85/93 (91%)
Frame = -2
Query: 518 FQGIVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIGKPHTVPCK 339
F+ V +GD NGH+GLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNKIGKPHTVPCK
Sbjct: 118 FKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCK 177
Query: 338 VTGKCGSVTVRLIPAPRGTGIVSAPVPKSFFRW 240
VTGKCGSVTVR++PAPRG+GIV+A VPK ++
Sbjct: 178 VTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQF 210
Score = 56.8 bits (131), Expect = 1e-08
Identities = 25/30 (83%), Positives = 28/30 (93%)
Frame = -3
Query: 592 GPSLNDEVLKIMPVQKQTRAGQRTRFKALL 503
GP+L DEV+KIMPVQKQTRAGQRTRFKA +
Sbjct: 93 GPTLKDEVMKIMPVQKQTRAGQRTRFKAFV 122
Score = 56.0 bits (129), Expect = 2e-08
Identities = 24/57 (42%), Positives = 35/57 (61%)
Frame = -1
Query: 255 ELLQMAGVQDCYTSARGSTGTLGNFXXXXXXXXXXXXXYLTPDLWRDIPLTKSPYSE 85
++LQ AG+ D +TS+RGST TLGNF +LTP+ W++ ++SPY E
Sbjct: 206 KVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLQKTYGFLTPEFWKETRFSRSPYQE 262
>At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) similar
to ribosomal protein S2 GI:430711 from [Drosophila
melanogaster]
Length = 284
Score = 171 bits (415), Expect = 4e-43
Identities = 75/93 (80%), Positives = 85/93 (91%)
Frame = -2
Query: 518 FQGIVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIGKPHTVPCK 339
F+ V +GD NGH+GLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNKIGKPHTVPCK
Sbjct: 117 FKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCK 176
Query: 338 VTGKCGSVTVRLIPAPRGTGIVSAPVPKSFFRW 240
VTGKCGSVTVR++PAPRG+GIV+A VPK ++
Sbjct: 177 VTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQF 209
Score = 56.8 bits (131), Expect = 1e-08
Identities = 25/30 (83%), Positives = 28/30 (93%)
Frame = -3
Query: 592 GPSLNDEVLKIMPVQKQTRAGQRTRFKALL 503
GP+L DEV+KIMPVQKQTRAGQRTRFKA +
Sbjct: 92 GPTLKDEVMKIMPVQKQTRAGQRTRFKAFV 121
Score = 56.0 bits (129), Expect = 2e-08
Identities = 24/57 (42%), Positives = 35/57 (61%)
Frame = -1
Query: 255 ELLQMAGVQDCYTSARGSTGTLGNFXXXXXXXXXXXXXYLTPDLWRDIPLTKSPYSE 85
++LQ AG+ D +TS+RGST TLGNF +LTP+ W++ ++SPY E
Sbjct: 205 KVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLQKTYGFLTPEFWKETRFSRSPYQE 261
>At1g58983.1 68414.m06666 40S ribosomal protein S2, putative similar
to ribosomal protein S2 GI:939717 from [Urechis caupo]
Length = 284
Score = 171 bits (415), Expect = 4e-43
Identities = 75/93 (80%), Positives = 85/93 (91%)
Frame = -2
Query: 518 FQGIVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIGKPHTVPCK 339
F+ V +GD NGH+GLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNKIGKPHTVPCK
Sbjct: 117 FKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCK 176
Query: 338 VTGKCGSVTVRLIPAPRGTGIVSAPVPKSFFRW 240
VTGKCGSVTVR++PAPRG+GIV+A VPK ++
Sbjct: 177 VTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQF 209
Score = 56.8 bits (131), Expect = 1e-08
Identities = 25/30 (83%), Positives = 28/30 (93%)
Frame = -3
Query: 592 GPSLNDEVLKIMPVQKQTRAGQRTRFKALL 503
GP+L DEV+KIMPVQKQTRAGQRTRFKA +
Sbjct: 92 GPTLKDEVMKIMPVQKQTRAGQRTRFKAFV 121
Score = 56.0 bits (129), Expect = 2e-08
Identities = 24/57 (42%), Positives = 35/57 (61%)
Frame = -1
Query: 255 ELLQMAGVQDCYTSARGSTGTLGNFXXXXXXXXXXXXXYLTPDLWRDIPLTKSPYSE 85
++LQ AG+ D +TS+RGST TLGNF +LTP+ W++ ++SPY E
Sbjct: 205 KVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLQKTYGFLTPEFWKETRFSRSPYQE 261
>At1g58684.1 68414.m06657 40S ribosomal protein S2, putative
Length = 284
Score = 171 bits (415), Expect = 4e-43
Identities = 75/93 (80%), Positives = 85/93 (91%)
Frame = -2
Query: 518 FQGIVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIGKPHTVPCK 339
F+ V +GD NGH+GLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNKIGKPHTVPCK
Sbjct: 117 FKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCK 176
Query: 338 VTGKCGSVTVRLIPAPRGTGIVSAPVPKSFFRW 240
VTGKCGSVTVR++PAPRG+GIV+A VPK ++
Sbjct: 177 VTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQF 209
Score = 56.8 bits (131), Expect = 1e-08
Identities = 25/30 (83%), Positives = 28/30 (93%)
Frame = -3
Query: 592 GPSLNDEVLKIMPVQKQTRAGQRTRFKALL 503
GP+L DEV+KIMPVQKQTRAGQRTRFKA +
Sbjct: 92 GPTLKDEVMKIMPVQKQTRAGQRTRFKAFV 121
Score = 56.0 bits (129), Expect = 2e-08
Identities = 24/57 (42%), Positives = 35/57 (61%)
Frame = -1
Query: 255 ELLQMAGVQDCYTSARGSTGTLGNFXXXXXXXXXXXXXYLTPDLWRDIPLTKSPYSE 85
++LQ AG+ D +TS+RGST TLGNF +LTP+ W++ ++SPY E
Sbjct: 205 KVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLQKTYGFLTPEFWKETRFSRSPYQE 261
>At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) similar
to ribosomal protein S2 GI:939717 from (Urechis caupo)
Length = 284
Score = 171 bits (415), Expect = 4e-43
Identities = 75/93 (80%), Positives = 85/93 (91%)
Frame = -2
Query: 518 FQGIVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIGKPHTVPCK 339
F+ V +GD NGH+GLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNKIGKPHTVPCK
Sbjct: 117 FKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCK 176
Query: 338 VTGKCGSVTVRLIPAPRGTGIVSAPVPKSFFRW 240
VTGKCGSVTVR++PAPRG+GIV+A VPK ++
Sbjct: 177 VTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQF 209
Score = 56.8 bits (131), Expect = 1e-08
Identities = 25/30 (83%), Positives = 28/30 (93%)
Frame = -3
Query: 592 GPSLNDEVLKIMPVQKQTRAGQRTRFKALL 503
GP+L DEV+KIMPVQKQTRAGQRTRFKA +
Sbjct: 92 GPTLKDEVMKIMPVQKQTRAGQRTRFKAFV 121
Score = 56.0 bits (129), Expect = 2e-08
Identities = 24/57 (42%), Positives = 35/57 (61%)
Frame = -1
Query: 255 ELLQMAGVQDCYTSARGSTGTLGNFXXXXXXXXXXXXXYLTPDLWRDIPLTKSPYSE 85
++LQ AG+ D +TS+RGST TLGNF +LTP+ W++ ++SPY E
Sbjct: 205 KVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLQKTYGFLTPEFWKETRFSRSPYQE 261
>At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S
ribosomal protein S2 - Arabidopsis thaliana,
SWISSPROT:RS2_ARATH
Length = 276
Score = 170 bits (414), Expect = 5e-43
Identities = 73/93 (78%), Positives = 86/93 (92%)
Frame = -2
Query: 518 FQGIVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIGKPHTVPCK 339
F+ + +GD+NGH+GLGVKCSKEVATAIRGAIILAKLSV+P+RRGYWGNKIGKPHTVPCK
Sbjct: 109 FKAFIVVGDSNGHVGLGVKCSKEVATAIRGAIILAKLSVVPIRRGYWGNKIGKPHTVPCK 168
Query: 338 VTGKCGSVTVRLIPAPRGTGIVSAPVPKSFFRW 240
VTGKCGSVTVR++PAPRG+GIV+A VPK ++
Sbjct: 169 VTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQF 201
Score = 58.4 bits (135), Expect = 3e-09
Identities = 26/30 (86%), Positives = 28/30 (93%)
Frame = -3
Query: 592 GPSLNDEVLKIMPVQKQTRAGQRTRFKALL 503
GPSL DEV+KIMPVQKQTRAGQRTRFKA +
Sbjct: 84 GPSLKDEVMKIMPVQKQTRAGQRTRFKAFI 113
Score = 57.2 bits (132), Expect = 8e-09
Identities = 25/57 (43%), Positives = 35/57 (61%)
Frame = -1
Query: 255 ELLQMAGVQDCYTSARGSTGTLGNFXXXXXXXXXXXXXYLTPDLWRDIPLTKSPYSE 85
++LQ AG+ D +TS+RGST TLGNF +LTP+ W++ +KSPY E
Sbjct: 197 KVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLQKTYGFLTPEFWKETRFSKSPYQE 253
>At2g33800.1 68415.m04147 ribosomal protein S5 family protein
contains Pfam profiles PF03719: Ribosomal protein S5,
C-terminal domain, PF00333: Ribosomal protein S5,
N-terminal domain
Length = 303
Score = 48.0 bits (109), Expect = 5e-06
Identities = 27/83 (32%), Positives = 46/83 (55%)
Frame = -2
Query: 518 FQGIVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIGKPHTVPCK 339
F+ IV +GD G++G+G +KEV A++ + I A+ +++ V + K T P +
Sbjct: 169 FRAIVVVGDKQGNVGVGCAKAKEVVAAVQKSAIDARRNIVQV-------PMTKYSTFPHR 221
Query: 338 VTGKCGSVTVRLIPAPRGTGIVS 270
G G+ V L PA GTG+++
Sbjct: 222 SEGDYGAAKVMLRPASPGTGVIA 244
>At5g53150.1 68418.m06607 DNAJ heat shock N-terminal
domain-containing protein low similarity to AHM1
[Triticum aestivum] GI:6691467; contains Pfam profile
PF00226: DnaJ domain
Length = 755
Score = 30.3 bits (65), Expect = 1.0
Identities = 17/57 (29%), Positives = 25/57 (43%)
Frame = +3
Query: 228 PVHQPSEEALRNWRRHNSSTTRGRNQPDCYRTTLAGDLARDGVWLSDLVTPVTSSNW 398
P HQP+ + N R H S+ R R +P + D +R G T +S+ W
Sbjct: 149 PSHQPTSNGIPNVREHVVSSARARYKPATRKPAARMDRSRTGSPAFVYPTQESSTFW 205
>At5g56520.1 68418.m07054 expressed protein
Length = 101
Score = 28.3 bits (60), Expect = 4.1
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = -1
Query: 288 WYWNCVCASS*ELLQMAGVQDCYTSARGSTGTLGN 184
W+WN +C E+L G +D GS+ + N
Sbjct: 54 WFWNYICVPPPEILYFDGRRDDDDDGYGSSSSSSN 88
>At2g04050.1 68415.m00386 MATE efflux family protein similar to
ripening regulated protein DDTFR18 [Lycopersicon
esculentum] GI:12231296; contains Pfam profile: PF01554
uncharacterized membrane protein family
Length = 476
Score = 27.9 bits (59), Expect = 5.4
Identities = 12/18 (66%), Positives = 12/18 (66%)
Frame = -2
Query: 356 HTVPCKVTGKCGSVTVRL 303
H VPCK T K G VTV L
Sbjct: 11 HLVPCKDTWKSGQVTVEL 28
>At4g24560.1 68417.m03520 ubiquitin-specific protease 16, putative
(UBP16) similar to ubiquitin-specific protease 16
GI:11993477 [Arabidopsis thaliana]
Length = 1008
Score = 27.1 bits (57), Expect = 9.4
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +3
Query: 363 SDLVTPVTSSNW*NRQLSKDNSASNGSGDFLAAL 464
+D ++P+ SSN + L K SAS+ +G LA L
Sbjct: 404 TDALSPLDSSNLSHVTLPKSKSASSENGSMLAPL 437
>At1g56650.1 68414.m06515 myb family transcription factor (MYB75)
contains Pfam profile: PF00249 myb-like DNA-binding
domain; identical to cDNA putative transcription factor
(MYB75) GI:3941507
Length = 248
Score = 27.1 bits (57), Expect = 9.4
Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Frame = -2
Query: 389 RGYWGNKIGKPHTVPCKVTGKCGSVT-VRLIPAPRGTGIVSAPVPKSF 249
+ YW + K H CK+ K +T + PA + V P P+SF
Sbjct: 101 KNYWNTHLSKKHEPCCKIKMKKRDITPIPTTPALKNN--VYKPRPRSF 146
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,696,336
Number of Sequences: 28952
Number of extensions: 316260
Number of successful extensions: 882
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 849
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 882
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1180950720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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