Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30543
         (800 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    29   0.033
EF222299-1|ABN79659.1|  136|Tribolium castaneum ion transport pe...    23   3.7  
EF222298-1|ABN79658.1|  120|Tribolium castaneum ion transport pe...    23   3.7  
EF222297-1|ABN79657.1|  140|Tribolium castaneum ion transport pe...    23   3.7  
AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.    22   5.0  

>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 29.5 bits (63), Expect = 0.033
 Identities = 17/46 (36%), Positives = 22/46 (47%)
 Frame = +1

Query: 610 LQDFHHSPAVLDYRAPHIAVACLTLALHVLGVSVPLASTLDDDAAW 747
           LQ  HHSP +     P+ A      A HV+G +VP     D DA +
Sbjct: 36  LQGLHHSPHLNHAMHPYHANHVNPTANHVMGGAVPDVGKRDKDAIY 81



 Score = 22.2 bits (45), Expect = 5.0
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +1

Query: 541 SLQEWFPVAQWRSAPIARMA 600
           ++ +W P  +W S P AR A
Sbjct: 271 AMGKWCPRREWSSPPDARAA 290


>EF222299-1|ABN79659.1|  136|Tribolium castaneum ion transport
           peptide isoform C protein.
          Length = 136

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = -2

Query: 325 TQTSSADYVAVVIILVGLFEEFVVNMAAVAIVAGCKPSFIPHSKTK 188
           +++ S   V V ++L  +F+E   + A      G  P+F+PH  TK
Sbjct: 6   SKSISTQAVWVCMVLAVVFQEITSSPA------GRSPAFLPHHFTK 45


>EF222298-1|ABN79658.1|  120|Tribolium castaneum ion transport
           peptide isoform B protein.
          Length = 120

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = -2

Query: 325 TQTSSADYVAVVIILVGLFEEFVVNMAAVAIVAGCKPSFIPHSKTK 188
           +++ S   V V ++L  +F+E   + A      G  P+F+PH  TK
Sbjct: 6   SKSISTQAVWVCMVLAVVFQEITSSPA------GRSPAFLPHHFTK 45


>EF222297-1|ABN79657.1|  140|Tribolium castaneum ion transport
           peptide isoform A protein.
          Length = 140

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = -2

Query: 325 TQTSSADYVAVVIILVGLFEEFVVNMAAVAIVAGCKPSFIPHSKTK 188
           +++ S   V V ++L  +F+E   + A      G  P+F+PH  TK
Sbjct: 6   SKSISTQAVWVCMVLAVVFQEITSSPA------GRSPAFLPHHFTK 45


>AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.
          Length = 209

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +1

Query: 541 SLQEWFPVAQWRSAPIARMA 600
           ++ +W P  +W S P AR A
Sbjct: 115 AMGKWCPRREWSSPPDARAA 134


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,224
Number of Sequences: 336
Number of extensions: 3546
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21791490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)