Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30543
         (800 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32F12.06 |pch1||cyclin Pch1|Schizosaccharomyces pombe|chr 2|...    44   3e-05
SPAC1296.05c |||cyclin L family cyclin|Schizosaccharomyces pombe...    31   0.25 
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce...    28   1.3  
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    26   7.2  
SPAPB1A10.07c |||sphingolipid biosynthesis protein|Schizosacchar...    26   7.2  

>SPBC32F12.06 |pch1||cyclin Pch1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 342

 Score = 43.6 bits (98), Expect = 3e-05
 Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 2/83 (2%)
 Frame = +2

Query: 254 YHKFFKEADKNDYDCYVICTACLCAAGKSRDEPVRLRDAVNVAHNSINRGAGPL--ELGD 427
           +H+F+      +Y  Y +   C+  A K  D   +LRD V        + +  L  E   
Sbjct: 72  FHRFYLRFSLKNYHYYEVAATCIFLATKVEDSVRKLRDIVINCAKVAQKNSNVLVDEQTK 131

Query: 428 EYWSWRSAVAQAELLVLRLLGFN 496
           EYW WR  +   E ++L  L F+
Sbjct: 132 EYWRWRDVILYTEEVLLEALCFD 154


>SPAC1296.05c |||cyclin L family cyclin|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 258

 Score = 30.7 bits (66), Expect = 0.25
 Identities = 17/68 (25%), Positives = 33/68 (48%)
 Frame = +1

Query: 511 PHRYLLHYLKSLQEWFPVAQWRSAPIARMAMAFLQDFHHSPAVLDYRAPHIAVACLTLAL 690
           PH+  +HYL++LQ         +  + ++   FL D   +   + Y    +A  C+ +A 
Sbjct: 152 PHKLAIHYLQTLQ------LIDNKKLLQITWNFLNDASRTRLCVLYPPFSLACGCIAMAA 205

Query: 691 HVLGVSVP 714
            V+G+ +P
Sbjct: 206 RVIGMKLP 213


>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1418

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 17/66 (25%), Positives = 32/66 (48%)
 Frame = +1

Query: 526  LHYLKSLQEWFPVAQWRSAPIARMAMAFLQDFHHSPAVLDYRAPHIAVACLTLALHVLGV 705
            +  L  L++WF   ++++   AR   A   +     A+  + AP+  ++C  L+    GV
Sbjct: 897  IQQLDILEDWF---EYKNIAYARFDGAS-SEMERQSAIDSFNAPNSELSCFLLSTRAGGV 952

Query: 706  SVPLAS 723
             + LAS
Sbjct: 953  GINLAS 958


>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = +2

Query: 239 NCCHIYHKFFKEADKNDYDCYVICTACLCAAGKSRDEPVR 358
           NC ++ H+ F   ++ ++   ++C  C      +RD PVR
Sbjct: 313 NCGNVGHRRFDCPERINHTMNIVCRHCGSIGHIARDCPVR 352


>SPAPB1A10.07c |||sphingolipid biosynthesis
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 441

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 7/31 (22%), Positives = 21/31 (67%)
 Frame = +1

Query: 523 LLHYLKSLQEWFPVAQWRSAPIARMAMAFLQ 615
           +L+++ SL  W  ++ W ++ +++++  +LQ
Sbjct: 49  VLYFVNSLLSWCMLSSWFNSKLSKLSAGYLQ 79


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,131,358
Number of Sequences: 5004
Number of extensions: 59268
Number of successful extensions: 172
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)