Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30543
(800 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0362 + 17998110-17998345,17998877-17998958,18000309-180003... 39 0.004
11_01_0357 + 2715271-2715509,2716200-2716281,2717117-2717251,271... 32 0.46
02_04_0055 - 19290975-19292312 31 1.4
02_03_0032 + 14112354-14112417,14112471-14112549,14114435-141145... 31 1.4
12_02_0226 + 15887835-15891188 29 4.3
06_03_0145 - 17226442-17226540,17226740-17226844,17227914-17228261 29 4.3
08_02_1630 - 28371925-28372407,28372514-28372714,28372797-28374242 28 7.5
05_04_0349 + 20492334-20492494,20493245-20493324,20493951-204940... 28 7.5
>12_02_0362 +
17998110-17998345,17998877-17998958,18000309-18000392,
18000600-18000734,18001395-18001570,18001654-18001805,
18003730-18004575,18004961-18005301
Length = 683
Score = 39.1 bits (87), Expect = 0.004
Identities = 24/85 (28%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Frame = +2
Query: 257 HKFFKEADKNDYDCYVICTACLCAAGKSRDEPVRLRDAVNVAHNSINR---GAGP-LELG 424
+KF +++ + I T C+ AGK + P L+D + V++ I++ AG ++
Sbjct: 120 YKFLLPMERDSIVVHTIATVCMFLAGKVEETPRPLKDVILVSYEIIHKKDPAAGQRIKQK 179
Query: 425 DEYWSWRSAVAQAELLVLRLLGFNL 499
+ Y + + AE +VL LGF+L
Sbjct: 180 EVYDQQKELILLAERVVLATLGFDL 204
>11_01_0357 +
2715271-2715509,2716200-2716281,2717117-2717251,
2717428-2717457,2717486-2717661,2717743-2717894,
2718395-2719083
Length = 500
Score = 32.3 bits (70), Expect = 0.46
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = +2
Query: 257 HKFFKEADKNDYDCYVICTACLCAAGKSRDEPVRLRDAVNVAHNSINR 400
H+FF D I T C+ AGK + P L+D + +++ I++
Sbjct: 93 HRFFLRQSHAKNDRRTIATVCMFLAGKVEETPRPLKDVILISYEIIHK 140
>02_04_0055 - 19290975-19292312
Length = 445
Score = 30.7 bits (66), Expect = 1.4
Identities = 20/64 (31%), Positives = 29/64 (45%)
Frame = -1
Query: 749 HHAASSSSVDANGTDTPNTCKAKVKHATAIWGAR*SSTAGE*WKS*RKAIAIRAMGAERH 570
H A +S+S ANG + V A+A W +R S AG + +A A ++ R
Sbjct: 185 HQAVTSTSYGANGGAAAAARRKSVSVASAAWASRGGSAAGAHEQQQPRAAATSSVSGRRL 244
Query: 569 CATG 558
A G
Sbjct: 245 EAIG 248
>02_03_0032 +
14112354-14112417,14112471-14112549,14114435-14114551,
14114721-14114802,14115734-14115868,14115948-14116123,
14116219-14116370,14116433-14117622
Length = 664
Score = 30.7 bits (66), Expect = 1.4
Identities = 24/94 (25%), Positives = 42/94 (44%), Gaps = 6/94 (6%)
Frame = +2
Query: 245 CHIYHKFFKEADKNDYDCYVICTACLCAAGKSRDEPVRLRDAVNVAHNSINR----GAGP 412
CH ++ ++ KN + I T C+ A K D P L + VA+ ++ R A
Sbjct: 99 CHRFY-LYQSLAKNGWQ--TIATVCIFLASKVEDTPCPLDQVIRVAYGTMYRRDPATARR 155
Query: 413 LELGDEYWSWRSAVAQAELLVLRLL--GFNLEAP 508
+ D + ++ + E LVL + FN++ P
Sbjct: 156 IHQKDVFEKQKALILTGERLVLTTVRFDFNIQHP 189
>12_02_0226 + 15887835-15891188
Length = 1117
Score = 29.1 bits (62), Expect = 4.3
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +2
Query: 287 DYDCYVICTACLCAAGKSRDEPVRLRDAVN 376
D++ Y + +CLC AG+S D + D +N
Sbjct: 1036 DFETYSMFMSCLCKAGRSEDGLQLIHDMLN 1065
>06_03_0145 - 17226442-17226540,17226740-17226844,17227914-17228261
Length = 183
Score = 29.1 bits (62), Expect = 4.3
Identities = 22/70 (31%), Positives = 31/70 (44%)
Frame = +2
Query: 296 CYVICTACLCAAGKSRDEPVRLRDAVNVAHNSINRGAGPLELGDEYWSWRSAVAQAELLV 475
C++I A AG+S P+R R A S+ GA E+ DE + S+ A
Sbjct: 19 CFLIALAGAALAGRSSRSPLRRRPAALGCAASLAAGAAK-EIADEAGFFGSSGASLRDAA 77
Query: 476 LRLLGFNLEA 505
L+G L A
Sbjct: 78 ADLVGATLAA 87
>08_02_1630 - 28371925-28372407,28372514-28372714,28372797-28374242
Length = 709
Score = 28.3 bits (60), Expect = 7.5
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = +2
Query: 272 EADKNDYDCYVICTACLCAAGKSRDEPVRLRDAVNVAHNSINRGA 406
+ D+ D +V AC C+ GKS DE V + D H+ GA
Sbjct: 637 DGDEMQPDAWV--GACTCSDGKSSDEFVSIEDDQLAIHSENEAGA 679
>05_04_0349 +
20492334-20492494,20493245-20493324,20493951-20494020,
20494089-20494139,20494535-20494649,20495401-20496268,
20496453-20496628,20500217-20500276,20501617-20501694,
20501951-20502008,20502658-20502720,20503397-20503453,
20503599-20503661,20504081-20504454
Length = 757
Score = 28.3 bits (60), Expect = 7.5
Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Frame = +2
Query: 158 RRAEPQLSNKFCF*MWNKAWLAACNYSNCCHIYHKFFKEADKN--DYDCYVICTACLCAA 331
RR E + +CF + L C++ NC YH + D + + D ICT C+A
Sbjct: 28 RRREGESEEDYCFACKDGGLLRFCDHRNCHKAYHPECVDKDDSFLNSDEQFICT-LFCSA 86
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,202,414
Number of Sequences: 37544
Number of extensions: 391561
Number of successful extensions: 1046
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1012
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1046
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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