Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30543
         (800 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48656| Best HMM Match : Extensin_2 (HMM E-Value=0.0009)             32   0.62 
SB_6241| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.3  
SB_8814| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   5.8  
SB_15896| Best HMM Match : SH3_1 (HMM E-Value=0.00055)                 28   7.7  

>SB_48656| Best HMM Match : Extensin_2 (HMM E-Value=0.0009)
          Length = 392

 Score = 31.9 bits (69), Expect = 0.62
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = +2

Query: 254 YHKFFKEADKNDYDCYVICTACLCAAGKSRDEPVRLRDAVNVAHN 388
           +H+F+      ++  +V   ACL  AGK  + P + RD +  A++
Sbjct: 8   FHRFYMIQSFKNFPRWVTGAACLFLAGKVEETPKKCRDIIKTANS 52


>SB_6241| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 933

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +1

Query: 712 PLASTLDDDAAWCSVFTRICRKKKI 786
           PL STL+    W S   R+CR KK+
Sbjct: 902 PLVSTLNGCQPWVSTSPRVCRHKKL 926


>SB_8814| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 824

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -1

Query: 299 SSRNHSCRPL*RICGKYGSSCYSCRLQAKLYST 201
           S R H+   + R+CGKY ++ YS      L+ T
Sbjct: 376 SPRFHAMNVMHRVCGKYDTTRYSTHTHTHLHDT 408


>SB_15896| Best HMM Match : SH3_1 (HMM E-Value=0.00055)
          Length = 300

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +2

Query: 269 KEADKNDYDCYVICTACLCAAGKSRDEPV 355
           +   K+ Y   V CT CLC    S+DE +
Sbjct: 171 RRGSKSPYCFIVACTCCLCCTVISKDETI 199


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,589,284
Number of Sequences: 59808
Number of extensions: 449583
Number of successful extensions: 1213
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1097
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1211
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2215746665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)