Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30543
         (800 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46794-3|CAA86783.1|  429|Caenorhabditis elegans Hypothetical pr...    28   8.9  
U23454-2|AAC46519.2|  368|Caenorhabditis elegans Hypothetical pr...    28   8.9  
L23648-3|AAN63386.1|  438|Caenorhabditis elegans Cyclin t protei...    28   8.9  
L23648-1|AAA28034.1|  468|Caenorhabditis elegans Cyclin t protei...    28   8.9  
AF025457-3|AAB70963.2|  248|Caenorhabditis elegans Hypothetical ...    28   8.9  

>Z46794-3|CAA86783.1|  429|Caenorhabditis elegans Hypothetical
           protein R06F6.4 protein.
          Length = 429

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -1

Query: 311 CRLRSSRNHSCRPL*RIC 258
           C   S+ NHSC+PL R+C
Sbjct: 170 CIKLSAANHSCKPLTRVC 187


>U23454-2|AAC46519.2|  368|Caenorhabditis elegans Hypothetical
           protein C10A4.5 protein.
          Length = 368

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -2

Query: 715 MALILLIHVKLKLNTPLLYGVLDNQVLL 632
           M + + + V   +N P LYG++DN V L
Sbjct: 148 MEITVFLVVAFGMNLPFLYGIVDNSVRL 175


>L23648-3|AAN63386.1|  438|Caenorhabditis elegans Cyclin t protein
           1.1, isoform b protein.
          Length = 438

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +2

Query: 257 HKFFKEADKNDYDCYVICTACLCAAGKSRDEPVRLRDAVNV 379
           H+F+       YD   +  AC+  AGKS++ P +L   ++V
Sbjct: 83  HRFYYLHSFKKYDYRDVGAACVFLAGKSQECPRKLSHVISV 123


>L23648-1|AAA28034.1|  468|Caenorhabditis elegans Cyclin t protein
           1.1, isoform a protein.
          Length = 468

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +2

Query: 257 HKFFKEADKNDYDCYVICTACLCAAGKSRDEPVRLRDAVNV 379
           H+F+       YD   +  AC+  AGKS++ P +L   ++V
Sbjct: 83  HRFYYLHSFKKYDYRDVGAACVFLAGKSQECPRKLSHVISV 123


>AF025457-3|AAB70963.2|  248|Caenorhabditis elegans Hypothetical
           protein C08E3.5 protein.
          Length = 248

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -2

Query: 754 LNTMQHHHLVWMPMALILLIHVKLKLNTPLLYGVLD 647
           L T+Q HH+ +  +A +L I    KL    LYG +D
Sbjct: 162 LKTIQSHHVSFQELAQLLPIFPAKKLEYLYLYGRMD 197


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,500,571
Number of Sequences: 27780
Number of extensions: 340742
Number of successful extensions: 829
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 786
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 829
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1956310428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)