Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30543
         (800 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g45190.1 68418.m05547 cyclin family protein similar to cyclin...    42   5e-04
At4g19600.1 68417.m02880 cyclin family protein similar to cyclin...    38   0.010
At4g19560.1 68417.m02876 cyclin family protein similar to SP|O88...    36   0.024
At1g79790.2 68414.m09312 haloacid dehalogenase-like hydrolase fa...    29   2.7  
At5g54690.1 68418.m06811 glycosyl transferase family 8 protein c...    28   6.3  
At1g27630.1 68414.m03375 cyclin family protein similar to cyclin...    28   6.3  

>At5g45190.1 68418.m05547 cyclin family protein similar to cyclin T1
           [Equus caballus] GI:5052355; contains Pfam profile
           PF00134: Cyclin, N-terminal domain
          Length = 579

 Score = 41.9 bits (94), Expect = 5e-04
 Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 4/85 (4%)
 Frame = +2

Query: 257 HKFFKEADKNDYDCYVICTACLCAAGKSRDEPVRLRDAVNVAHNSINR---GAG-PLELG 424
           H+FF        D   I T C+  AGK  + P  L+D + V++  IN+   GA   ++  
Sbjct: 89  HRFFFRQSHAKNDRRTIATVCMFLAGKVEETPRPLKDVIFVSYEIINKKDPGASQKIKQK 148

Query: 425 DEYWSWRSAVAQAELLVLRLLGFNL 499
           + Y   +  +   E +VL  LGF+L
Sbjct: 149 EVYEQQKELILNGEKIVLSTLGFDL 173


>At4g19600.1 68417.m02880 cyclin family protein similar to cyclin
           T2a [Homo sapiens] GI:2981198; contains Pfam profile
           PF00134: Cyclin, N-terminal domain
          Length = 541

 Score = 37.5 bits (83), Expect = 0.010
 Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 4/84 (4%)
 Frame = +2

Query: 257 HKFFKEADKNDYDCYVICTACLCAAGKSRDEPVRLRDAVNVAHNSINR----GAGPLELG 424
           H+FF        D   I T C+  AGK  + P  L+D + V++  I++     A  ++  
Sbjct: 89  HRFFIRQSHARNDRRTIATVCMFLAGKVEETPRPLKDVIVVSYEIIHKKDPTTAQKIKQK 148

Query: 425 DEYWSWRSAVAQAELLVLRLLGFN 496
           + Y   +  +   E +VL  LGF+
Sbjct: 149 EVYEQQKELILNGEKIVLSTLGFD 172


>At4g19560.1 68417.m02876 cyclin family protein similar to SP|O88874
           Cyclin K (Fragment) {Mus musculus}; contains Pfam
           profile PF00134: Cyclin, N-terminal domain
          Length = 474

 Score = 36.3 bits (80), Expect = 0.024
 Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
 Frame = +2

Query: 296 CYVICTACLCAAGKSRDEPVRLRDAVNVAHNSIN-RGAGPLELGDEYWSWRSAVAQAELL 472
           C  I T C+  AGK  + PV L D +  ++  I+ +     +  + Y   +  V   E L
Sbjct: 101 CMTIATVCMLLAGKVEETPVTLEDVIIASYERIHKKDLAGAQRKEVYDQQKELVLIGEEL 160

Query: 473 VLRLLGFNL 499
           VL  L F+L
Sbjct: 161 VLSTLNFDL 169


>At1g79790.2 68414.m09312 haloacid dehalogenase-like hydrolase
           family protein contains InterPro accession IPR005834:
           Haloacid dehalogenase-like hydrolase
          Length = 198

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = +2

Query: 209 KAWLAACNYSNCCHIYHKFFKEADKNDYDCYVICTACLCAAGKSRDEP 352
           +++++ C   +C H Y+      DK     Y+  T C C AGK + +P
Sbjct: 92  RSFMSLCLLLSCFHRYNII---EDKLKLSAYLSWTFCSCIAGKRKPDP 136


>At5g54690.1 68418.m06811 glycosyl transferase family 8 protein
           contains Pfam profile: PF01501 glycosyl transferase
           family 8
          Length = 535

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = +1

Query: 511 PHRYLLHYLKSLQEWFPVAQWRSAPIARMAMAFLQDFHH 627
           PH+ +LH +   + +FP+  W S      A+  ++  HH
Sbjct: 235 PHKIVLHIITDRKTYFPMQAWFSLHPLSPAIIEVKALHH 273


>At1g27630.1 68414.m03375 cyclin family protein similar to cyclin T1
           [Homo sapiens] GI:2981196; contains Pfam profile
           PF00134: Cyclin, N-terminal domain
          Length = 317

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 20/86 (23%), Positives = 36/86 (41%), Gaps = 4/86 (4%)
 Frame = +2

Query: 257 HKFFKEADKNDYDCYVICTACLCAAGKSRDEPVRLRDAVNVAHNSINR----GAGPLELG 424
           H+F+        D   I T+ L  A K+ DEP +L   V  ++  I       +  +   
Sbjct: 90  HRFYMRQSHAKNDWQTIATSSLFLACKAEDEPCQLSSVVVASYEIIYEWDPSASIRIHQT 149

Query: 425 DEYWSWRSAVAQAELLVLRLLGFNLE 502
           + Y  ++  +   E L+L    F+L+
Sbjct: 150 ECYHEFKEIILSGESLLLSTSAFHLD 175


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,353,021
Number of Sequences: 28952
Number of extensions: 311100
Number of successful extensions: 761
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 746
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 761
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1814318400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)