Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30542
         (426 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56768| Best HMM Match : VWA (HMM E-Value=0.0042)                    29   1.2  
SB_34754| Best HMM Match : TSP_1 (HMM E-Value=7.4e-12)                 27   4.9  
SB_248| Best HMM Match : No HMM Matches (HMM E-Value=.)                27   4.9  
SB_49308| Best HMM Match : Ribosomal_S27e (HMM E-Value=5.9)            27   8.6  

>SB_56768| Best HMM Match : VWA (HMM E-Value=0.0042)
          Length = 815

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 15/59 (25%), Positives = 24/59 (40%)
 Frame = +3

Query: 192 WATKMKEKVIHSEGRNIILKRNIKENDY*AIGIQI*KVQECPGGLNTKTRYRYILMYMY 368
           W      K+     RNI  +   +END   I +   ++    GGL  +    ++L Y Y
Sbjct: 378 WQVNKSSKIAKRSWRNITYRLRTRENDIRTISLPRRRLSTPKGGLQAEGVAEHVLDYTY 436


>SB_34754| Best HMM Match : TSP_1 (HMM E-Value=7.4e-12)
          Length = 439

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 9/17 (52%), Positives = 15/17 (88%)
 Frame = -3

Query: 226 LCMTFSFIFVAHNNPLE 176
           +CM+F+F+F+A +NP E
Sbjct: 371 ICMSFNFLFIAVDNPPE 387


>SB_248| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2656

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -3

Query: 295  ICIPIAQ*SFSFMFLFRIMFLPSLCMTFSFIF 200
            ICI     S  +++L   +FLP LC+   F+F
Sbjct: 1749 ICIFALSVSLHYLYLCVFVFLPYLCLCAIFVF 1780


>SB_49308| Best HMM Match : Ribosomal_S27e (HMM E-Value=5.9)
          Length = 379

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -3

Query: 223 CMTFSFIFVAHNNPLEVKKINVKRSVTTV 137
           C+  S+  V H + LE K I +K+  TT+
Sbjct: 191 CLLGSYYIVVHPSSLEEKNIIIKQGETTI 219


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,949,008
Number of Sequences: 59808
Number of extensions: 164317
Number of successful extensions: 299
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 283
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 298
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 814166562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)