Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30542
         (426 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF125447-2|AAD12808.1|  250|Caenorhabditis elegans Hypothetical ...    29   1.8  
Z83731-1|CAB06022.2|  208|Caenorhabditis elegans Hypothetical pr...    28   3.2  
AF016665-8|AAC71178.1|  324|Caenorhabditis elegans Serpentine re...    28   3.2  
AF016446-6|AAC24162.1|  322|Caenorhabditis elegans Serpentine re...    27   7.4  
Z71185-3|CAA94905.2|  427|Caenorhabditis elegans Hypothetical pr...    26   9.8  
U51997-2|AAG24069.1|  332|Caenorhabditis elegans Serpentine rece...    26   9.8  

>AF125447-2|AAD12808.1|  250|Caenorhabditis elegans Hypothetical
           protein Y14H12B.1a protein.
          Length = 250

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +3

Query: 165 IFFTSRGLLWATKMKEKVIHSE 230
           +F+TSRGL W T +  K+ +SE
Sbjct: 37  VFYTSRGLQWHTSVAHKLDNSE 58


>Z83731-1|CAB06022.2|  208|Caenorhabditis elegans Hypothetical
           protein M04C9.3 protein.
          Length = 208

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 7/37 (18%)
 Frame = -2

Query: 341 SGFCIKTTR-------AFLHFLNLYPNCSVIIFLYVP 252
           SG C+K +         F +FL+L+ +CS  +F++VP
Sbjct: 146 SGLCVKKSEDPGRYLCGFSYFLSLHEDCSKSLFIHVP 182


>AF016665-8|AAC71178.1|  324|Caenorhabditis elegans Serpentine
           receptor, class h protein250 protein.
          Length = 324

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -3

Query: 271 SFSFMFLFRIMFLPSLCMTFSFIFVAHNNPL 179
           S  F+F+   MF+P + + +  IF  HN  L
Sbjct: 242 SLQFVFIMTFMFIPCVLLLYIVIFKYHNQIL 272


>AF016446-6|AAC24162.1|  322|Caenorhabditis elegans Serpentine
           receptor, class h protein20 protein.
          Length = 322

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 4/30 (13%)
 Frame = -2

Query: 302 FLNLYPNCSVI----IFLYVPFQDYVSPFT 225
           FL L P  +++    ++L VPF DYVS  T
Sbjct: 167 FLKLNPLVTIVNCDTVYLIVPFSDYVSSIT 196


>Z71185-3|CAA94905.2|  427|Caenorhabditis elegans Hypothetical
           protein C35A5.4 protein.
          Length = 427

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 12/45 (26%), Positives = 21/45 (46%)
 Frame = -3

Query: 244 IMFLPSLCMTFSFIFVAHNNPLEVKKINVKRSVTTVQQKLSKNSP 110
           I+  P +C TFS   + HN     +K+ +    T +++K     P
Sbjct: 159 ILLAPQICQTFSPEAIFHNE-RSYEKLRIMLKYTGIEEKSGDGRP 202


>U51997-2|AAG24069.1|  332|Caenorhabditis elegans Serpentine
           receptor, class h protein19 protein.
          Length = 332

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -2

Query: 284 NCSVIIFLYVPFQDYVSPFTV 222
           NCS   FL +PF DYVS F +
Sbjct: 179 NCSSS-FLLIPFTDYVSTFVL 198


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,667,562
Number of Sequences: 27780
Number of extensions: 138894
Number of successful extensions: 374
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 371
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 374
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 703342068
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)