Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30542
         (426 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    22   3.3  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   4.4  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    21   5.8  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    21   7.6  

>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 21.8 bits (44), Expect = 3.3
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +2

Query: 197 NKNERKGHTQ*REKHNPEKEHKGK 268
           N+ +RK   Q RE+   ++EH  +
Sbjct: 62  NEQQRKEMEQMREREREQREHSDR 85


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.4 bits (43), Expect = 4.4
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = -1

Query: 270 HFPLCSFSGLCFSLHC 223
           H P+C+ +G  ++ HC
Sbjct: 114 HRPVCASNGKIYANHC 129


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 21.0 bits (42), Expect = 5.8
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +2

Query: 266 K*LLSNWDTNLKSARMPGW 322
           K L+ NW T +  + +P W
Sbjct: 324 KKLIDNWMTYMPPSGIPNW 342


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 20.6 bits (41), Expect = 7.6
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +2

Query: 266 K*LLSNWDTNLKSARMPGW 322
           K L+ NW T +  + +P W
Sbjct: 324 KKLVDNWMTYMPPSGIPNW 342


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,115
Number of Sequences: 438
Number of extensions: 1634
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10997463
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)