Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30542
         (426 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g40310.1 68415.m04966 glycoside hydrolase family 28 protein /...    29   1.7  
At3g42850.1 68416.m04489 galactokinase, putative contains some s...    28   2.3  
At3g51740.1 68416.m05673 leucine-rich repeat transmembrane prote...    28   3.0  

>At2g40310.1 68415.m04966 glycoside hydrolase family 28 protein /
           polygalacturonase (pectinase) family protein similar to
           SP|P35339 Exopolygalacturonase precursor (EC 3.2.1.67)
           (Pectinase) {Zea mays}; contains Pfam profile PF00295:
           Glycosyl hydrolases family 28
           (polygalacturonases)(Galacturan
           1,4-alpha-galacturonidase)
          Length = 404

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = -3

Query: 265 SFMFLFRIMFLPSLCMTFSFIFVAHNNPLEVKKINVKR 152
           S  F+F++     LC++F FIFVA    +  K  NV+R
Sbjct: 3   SIAFVFKV-----LCVSFLFIFVASRPTIRPKTFNVQR 35


>At3g42850.1 68416.m04489 galactokinase, putative contains some
           similarity to galactokinase [Pasteurella multocida]
           SWISS-PROT:P57899
          Length = 964

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +2

Query: 239 HNPEKEHKGK*LLSNWDTNLKSARMPG 319
           H+ E+EH     L NW+ ++  AR PG
Sbjct: 464 HHQEREHLAAAALFNWEEDIVVARAPG 490


>At3g51740.1 68416.m05673 leucine-rich repeat transmembrane protein
           kinase, putative brassinosteroid-insensitive protein
           BRI1 - Arabidopsis thaliana, PIR:T09356
          Length = 836

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -2

Query: 242 YVSPFTVYDLFFHFC 198
           Y +PF +Y++ FHFC
Sbjct: 5   YKNPFRIYEISFHFC 19


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,009,079
Number of Sequences: 28952
Number of extensions: 119191
Number of successful extensions: 244
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 241
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 244
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 665183504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)