Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30541
         (576 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53343| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.29 
SB_33756| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0035)               30   1.2  
SB_13545| Best HMM Match : Peptidase_M49 (HMM E-Value=0)               30   1.2  
SB_28910| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.1  
SB_9558| Best HMM Match : DEAD (HMM E-Value=0)                         29   3.6  
SB_43550| Best HMM Match : Laminin_EGF (HMM E-Value=0)                 28   4.8  
SB_38207| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.8  
SB_27470| Best HMM Match : Baculo_PEP_C (HMM E-Value=2.8)              28   4.8  
SB_24669| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.8  
SB_22561| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.8  
SB_41995| Best HMM Match : ANF_receptor (HMM E-Value=0)                28   6.3  
SB_57905| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.3  

>SB_53343| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 779

 Score = 32.3 bits (70), Expect = 0.29
 Identities = 21/71 (29%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
 Frame = +3

Query: 99  KIVRSEFDASPDGAYNYNFETSNGIVRSETGELKEALDDDNKPHVIV--AVRGSTVTRTL 272
           ++ +SE  +SP  +Y+  F+++N     E+ + K++   +NK    V  +   S  T  +
Sbjct: 148 RVTKSESLSSPSNSYSQAFKSNNSR-EEESLDPKKSSGTENKSFETVKGSESRSKETPAV 206

Query: 273 TANLKPLRTSL 305
           TAN+K LRT +
Sbjct: 207 TANIKELRTQI 217


>SB_33756| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0035)
          Length = 351

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = -2

Query: 278 CRQC-SCNCASTHSNNNVRLIVVVESLLQLT 189
           C  C  CNCA+  +NNNV+L    + L++++
Sbjct: 317 CVDCLCCNCANPFNNNNVKLTENTKQLMEIS 347


>SB_13545| Best HMM Match : Peptidase_M49 (HMM E-Value=0)
          Length = 488

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 13/28 (46%), Positives = 21/28 (75%)
 Frame = +3

Query: 111 SEFDASPDGAYNYNFETSNGIVRSETGE 194
           +E DA PDG+YN++ ++   +V +ETGE
Sbjct: 218 TEEDAKPDGSYNFDHKS---VVNTETGE 242


>SB_28910| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 417

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +3

Query: 78  PPTEDYPKIVRSEFDASPDGAY 143
           PPT+DY +  RS+ D S DG Y
Sbjct: 17  PPTKDYDRRSRSQDDDSDDGCY 38


>SB_9558| Best HMM Match : DEAD (HMM E-Value=0)
          Length = 436

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
 Frame = +3

Query: 195 LKEALDDDNKPHVIVAVRG---STVTRTLTANLKPLR 296
           +K+AL   NKPHV++A  G     +  T T NLK ++
Sbjct: 116 MKQALSLANKPHVVIATPGRLADHIKSTDTLNLKKIQ 152


>SB_43550| Best HMM Match : Laminin_EGF (HMM E-Value=0)
          Length = 1182

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 22/85 (25%), Positives = 31/85 (36%), Gaps = 1/85 (1%)
 Frame = -2

Query: 287 FQVCRQCSCNCASTHSNNNVRLIVVVESLLQLTSFATHDAVG-SLEIVVVSSIGAGVEFR 111
           F +CR C C   ++  N    + V  +          H+ VG + E   V   G   +  
Sbjct: 324 FPLCRPCRCYGHASSCNPKTGVCVDCQ----------HNTVGKNCEACAVGFYGIATKGT 373

Query: 110 PNDLRVVLCRGGSDDGSHKGESYND 36
           PND +   C GGS         Y D
Sbjct: 374 PNDCKRCQCPGGSSGNKFSESCYVD 398


>SB_38207| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 189

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = -1

Query: 210 REPPSAHQFRYARCRWKSRNCSCKLHRGWRRIQTERS*GSP 88
           R PPS    R+    W +R CS  L +G +  +  R+   P
Sbjct: 103 RPPPSEGAKRHEFATWHARGCSADLEKGVKSNEEGRASSQP 143


>SB_27470| Best HMM Match : Baculo_PEP_C (HMM E-Value=2.8)
          Length = 627

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 22/58 (37%), Positives = 30/58 (51%)
 Frame = +3

Query: 216 DNKPHVIVAVRGSTVTRTLTANLKPLRTSLTRLDTMLRVNLFLRSPPPRAKLLNSLDR 389
           D  P V+   R  T+ R  T  L  L  ++TRLDT+LRV   L + P     L++L R
Sbjct: 135 DTLPRVVT--RLDTLPRVGT-RLDTLPRAVTRLDTLLRVGTRLDTLPRVVTRLDTLPR 189


>SB_24669| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 164

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = +2

Query: 116 IRRQPRWSLQLQFRDFQRHRA*RNW*AEGGSRRRQ 220
           +RR+  WS+Q++  +  RH   + W   GG ++R+
Sbjct: 3   VRRKDAWSMQVRQVEHPRHSYVQMWRKFGGPKKRE 37


>SB_22561| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 310

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +3

Query: 114 EFDASPDGAYNYNFETSNGIVRSETGELKEALDDDNKPHVIVA 242
           E D+     YNY+    NG+  S+ G+L      DN  HV+ A
Sbjct: 65  EPDSEQADGYNYDTSHHNGVATSQRGQLARLAMGDNN-HVLNA 106


>SB_41995| Best HMM Match : ANF_receptor (HMM E-Value=0)
          Length = 785

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = -1

Query: 225 AYCRRREPPSAHQFRYARCRWKSRNC 148
           +YC+ R PP   Q R   C W+   C
Sbjct: 524 SYCKDRCPPGYWQTRMKNCCWECTEC 549


>SB_57905| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 79

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = +3

Query: 204 ALDDDNKPHVI--VAVRGSTVTRTLTANLKPLRTSLTRLDTMLRVNL 338
           ALD+  + H++  V VRGST+    T  L  L  S  ++D   R  L
Sbjct: 10  ALDEHFRSHILHFVVVRGSTIDENSTTGLFTLDLSKRKVDLRNRRKL 56


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,379,640
Number of Sequences: 59808
Number of extensions: 326697
Number of successful extensions: 1037
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 909
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1023
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1373676929
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)